Factsheet for VIT_11s0065g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41401	Soybean	nucleus	86.03	87.7
KRH60115	Soybean	cytosol	84.12	86.56
Solyc05g047520.2.1	Tomato	nucleus	80.4	85.47
PGSC0003DMT400035614	Potato	cytosol	85.33	85.24
AT2G06990.1	Thale cress	nucleus	83.42	83.42
Bra029783.1-P	Field mustard	cytosol	81.91	82.83
CDY44724	Canola	cytosol	81.91	82.49
CDY41593	Canola	cytosol	81.71	82.04
Os11t0176200-01	Rice	nucleus	80.6	79.96
TraesCS4A01G216300.1	Wheat	cytosol	79.9	79.18
EES02351	Sorghum	nucleus	79.8	79.08
TraesCS4D01G091400.1	Wheat	cytosol	80.4	79.05
HORVU2Hr1G028060.7	Barley	cytosol	79.6	78.73
TraesCS2B01G179600.1	Wheat	cytosol	79.4	78.53
Zm00001d008777_P008	Maize	nucleus	79.2	78.33
TraesCS2D01G159900.1	Wheat	cytosol	79.0	78.13
TraesCS2A01G154400.1	Wheat	cytosol	79.0	77.59
GSMUA_Achr3P05450_001	Banana	nucleus	82.31	75.83
HORVU4Hr1G018990.9	Barley	plastid	79.0	75.8
TraesCS4B01G094600.1	Wheat	nucleus	79.5	72.17
VIT_06s0009g01750.t01	Wine grape	cytosol	47.44	47.34
VIT_06s0004g05970.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.37	31.29
VIT_01s0026g01000.t01	Wine grape	cytosol	23.42	21.9
VIT_06s0004g05980.t01	Wine grape	mitochondrion	6.93	20.72
VIT_14s0066g00880.t01	Wine grape	nucleus	12.66	9.88
VIT_17s0000g07240.t01	Wine grape	cytosol	6.83	9.56
VIT_05s0102g00480.t01	Wine grape	cytosol	18.09	8.71
VIT_17s0000g07230.t01	Wine grape	cytosol	10.15	7.37
VIT_04s0008g03960.t01	Wine grape	nucleus	15.48	7.14

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:100246661	wikigene:100246661	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300
Gene3D:3.40.50.300	ProteinID:CCB48916	ProteinID:CCB48916.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6H9P7
EMBL:FN595502	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006397	GO:GO:0006401	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010093
GO:GO:0016607	GO:GO:0016787	GO:GO:0040029	GO:GO:0055087	GO:GO:0060149	GO:GO:0070478
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100246661	wikigene:LOC100246661
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF6	SMART:SM00487	SMART:SM00490
SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI0002108431	ArrayExpress:VIT_11s0065g00340
EnsemblPlantsGene:VIT_11s0065g00340	EnsemblPlants:VIT_11s0065g00340.t01	unigene:Vvi.8984	RefSeq:XP_002266524	RefSeq:XP_002266524.2	RefSeq:XP_010656701.1
RefSeq:XP_010656702.1	RefSeq:XP_010656703.1	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:14061497..14090143

Molecular Weight (calculated)

111654.0 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.295

Length

995 amino acids

Sequence
(BLAST)

001: MEESPTLGKR KLPEENSEVK QTPKQEESAS KRRNLTRTCV HEAAVPVGYT SNKDESVHGT LSNPVYNGKM AKTYPFTLDP FQQVSVACLE RNESVLVSAH
101: TSAGKTAVAE YSIAMAFRDK QRVIYTSPLK ALSNQKYREL SQEFSDVGLM TGDVTLSPNA SCLVMTTEIL RGMLYRGSEV LKEVAWVIFD EIHYMKDRER
201: GVVWEESIIF LPTAIKMVFL SATMSNATEF AEWICNLHKQ PCHVVYTDFR PTPLQHYVFP IGGSGLYLVV DENEQFREDN FVKLQDSFTK QKQGVGSKSV
301: NSKTSGRIAK GGNASGGSDI FKIVKMIMER KFQPVIIFSF SRRECEQHAM SMSKLDFNTK EEKDVVEQVF RNAVLCLNEE DRNLPAIELM LPLLQRGIAV
401: HHSGLLPIIK ELVELLFQEG LVKALFATET FAMGLNMPAK TVVFTAVKKW DGDSHRFIGS GEYIQMSGRA GRRGKDDRGI CIIMIDEQME MNTLRDMVLG
501: KPAPLVSTFR LSYYSILNLM SRAEGQFTAE HVISNSFHQF QYEKALPDIG KKVSKLEHEA AMLDASGEAE VAEYHKLRLD IAQLEKKMMS EITRPERVLY
601: FLLPGRLVKV REGGTDWGWG VVVNVVKKAP AGGTLPSALS SSRGGGYIVD TLLHCSPGST ENGSRPKPCP PHPGEKGEMH VVPVQLSLIS ALSKLRISIP
701: PDLRPLEARQ SILLAVQELG TRFPQGLPKL NPVKDMGIED PEFVELANQI EELEQKLFAH PLHKSQDENQ IRSFQRKAEV NHEIQQLKTK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQLKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPGDKS TEQIHLRTEL AKPLQQLQDS ARRIAEIQHE
901: CKLEVNVDEY VESTARPYLM DVIYCWSKGA TFAEVIQMTD IFEGSIIRSA RRLDEFLNQL RAAANAVGEA NLENKFAAAS ESLRRGIMFA NSLYL

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.