Factsheet for GSMUA_Achr3P05450_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0065g00340.t01	Wine grape	cytosol	75.83	82.31
KRH41401	Soybean	nucleus	72.5	80.23
TraesCS4A01G216300.1	Wheat	cytosol	73.98	79.58
TraesCS4D01G091400.1	Wheat	cytosol	74.17	79.15
Os11t0176200-01	Rice	nucleus	73.33	78.96
KRH60115	Soybean	cytosol	70.65	78.9
HORVU2Hr1G028060.7	Barley	cytosol	73.43	78.83
TraesCS2B01G179600.1	Wheat	cytosol	73.33	78.73
TraesCS2D01G159900.1	Wheat	cytosol	73.06	78.43
EES02351	Sorghum	nucleus	72.87	78.39
Zm00001d008777_P008	Maize	nucleus	72.59	77.93
TraesCS2A01G154400.1	Wheat	cytosol	72.96	77.79
Solyc12g017860.1.1	Tomato	nucleus	66.76	76.7
Bra029783.1-P	Field mustard	cytosol	69.72	76.52
AT2G06990.1	Thale cress	nucleus	70.46	76.48
PGSC0003DMT400052548	Potato	cytosol	69.17	76.3
CDY44724	Canola	cytosol	69.72	76.21
HORVU4Hr1G018990.9	Barley	plastid	72.96	75.99
CDY41593	Canola	cytosol	69.44	75.68
TraesCS4B01G094600.1	Wheat	nucleus	73.52	72.45
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	41.67	44.47
GSMUA_Achr9P03710_001	Banana	cytosol	30.46	24.94
GSMUA_Achr8P22600_001	Banana	plastid	22.04	19.73
GSMUA_Achr1P12000_001	Banana	cytosol, nucleus, plastid	11.57	11.32
GSMUA_Achr3P29700_001	Banana	cytosol	13.8	8.1
GSMUA_Achr8P28180_001	Banana	cytosol	13.43	7.23
GSMUA_Achr11P...	Banana	nucleus	12.59	6.66

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:EF_Hand_1_Ca_BS	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003724	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006397	GO:GO:0006401	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010093	GO:GO:0016020
GO:GO:0016021	GO:GO:0016607	GO:GO:0016787	GO:GO:0040029	GO:GO:0060149	EnsemblPlantsGene:GSMUA_Achr3G05450_001
EnsemblPlants:GSMUA_Achr3P05450_001	EnsemblPlants:GSMUA_Achr3T05450_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:M0SC13	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234
PIRSF:PIRSF005198	ScanProsite:PS00018	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF6
SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C
TMHMM:TMhelix	UniParc:UPI000295E32C	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:

Description

Superkiller viralicidic activity 2-like 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G05450_001]

Coordinates

chr3:-:3593464..3604088

Molecular Weight (calculated)

121637.0 Da

IEP (calculated)

7.350

GRAVY (calculated)

-0.223

Length

1080 amino acids

Sequence
(BLAST)

0001: MEETVLPGKR KLPEQDSNNN SVLADETTKA EPIPKRRNLS RTCVHEVAVP NGYSSSKDEA TFGSLSNPVY GGQMAKTYPF ELDPFQRVSV ACLERNESVL
0101: VSAHTSAGKT AVAEYAIAMS FRDKQRVIYT SPLKALSNQK YRELSQEFSD VGLMTGDVTI APNASCLVMT TEILRGMLYR GSEVIKEVAW VIFDEIHYMK
0201: DRERGWICNL HKQPCHVVYT DFRPTPLQHY VFPIGGSGLY LVVDENEQFK EDNFMKLQET FTKQKAQADG NKSGGKVSGR IAKGGTGSAG SDIYKIVKQD
0301: SANSCGQTNR RLEHLMYIML DVASAALQIV MLCHGIMPIL LLTISYWGVL KLGYLYVAPS AWVNMAYVDT IMCLYPYFLP HIFYGFTHCS AYVTTFFCPT
0401: RWMLLTRMIM ERKFQPVIIF SFSRRECEQH AMSMSKLDFN SQEEKDAVEQ VFRNAVLCLN EEDRTLPAIE LMLPLLKRGI AVHHSGLLPI IKELVELLFQ
0501: EGLVKALFAT ETFAMGLNMP AKTVVFTSVK KWDGDSNRYI GSGEYIQMSG RAGRRGKDER GICVIMIDEK MEMNILKDMV LGKPAPLVST FRLSYYSILN
0601: LMSRAEGQFT AEHVIKNSFH QFQYEKALPD MGQKISKLEQ EACLLDSSGE AELAEYHKLG LEVAQLEKKI MSEITRPEKV LMYLVPGRLV KVRDGGTDWG
0701: WGVVVNVVKK PPTASSTLPP ALVSARGSSA YIVDTLLHCS PGLSENGSRP KPCPPRPGEK GEMHVVPVPL PLISGLSSIR IAIPSDLRPA EARQNVLLAV
0801: QELGNRYPQG LPKLHPVKDM GIKDPEFVNL VNQIEEIEQK IFAHPLHKSG QSEQQFKWYQ RKAEVNHEIQ HIKSKMRDSQ LQKFRDELKN RSRVLKMLGH
0901: IDADGVLQLK GRAACLIDTG DELLVTELMF NGTFNDLDHH QVAALASCFI PCDKSNEQIH LRNELTKPLQ QLQDSARRIA QIQRECKLDI NVEEYVESTS
1001: RPYLMDVIYC WSKGASFAEV IEMTDIFEGS IIRLARRLDE FLNQLRAAAH AVGEVDLEKK FEAGSESLRR GIMFANSLYL

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.