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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d008777_P008 Maize nucleus 96.51 96.32
Os11t0176200-01 Rice nucleus 89.94 90.03
TraesCS2B01G179600.1 Wheat cytosol 88.65 88.47
TraesCS4A01G216300.1 Wheat cytosol 88.45 88.45
TraesCS2D01G159900.1 Wheat cytosol 88.35 88.17
HORVU2Hr1G028060.7 Barley cytosol 88.35 88.17
TraesCS4D01G091400.1 Wheat cytosol 88.15 87.45
TraesCS2A01G154400.1 Wheat cytosol 88.15 87.36
HORVU4Hr1G018990.9 Barley plastid 87.75 84.96
TraesCS4B01G094600.1 Wheat nucleus 88.35 80.93
VIT_11s0065g00340.t01 Wine grape cytosol 79.08 79.8
KRH41401 Soybean nucleus 75.3 77.46
Solyc05g047520.2.1 Tomato nucleus 71.81 77.03
KRH60115 Soybean cytosol 74.0 76.84
PGSC0003DMT400035614 Potato cytosol 75.8 76.41
Bra029783.1-P Field mustard cytosol 74.8 76.32
CDY41593 Canola cytosol 75.2 76.19
CDY44724 Canola cytosol 74.9 76.11
AT2G06990.1 Thale cress nucleus 75.3 75.98
Solyc12g017860.1.1 Tomato nucleus 69.82 74.57
PGSC0003DMT400052548 Potato cytosol 72.11 73.95
GSMUA_Achr3P05450_001 Banana nucleus 78.39 72.87
EER87693 Sorghum cytosol 48.71 48.85
KXG29518 Sorghum cytosol 35.46 25.97
OQU85441 Sorghum plastid 23.9 20.17
OQU85316 Sorghum nucleus 13.05 10.12
KXG37223 Sorghum cytosol 18.13 8.26
EER99779 Sorghum cytosol 17.53 8.07
EES04337 Sorghum cytosol 17.43 8.05
KXG39883 Sorghum mitochondrion 16.14 7.77
OQU79067 Sorghum plastid 14.74 7.12
Protein Annotations
Gene3D:1.10.3380.30Gene3D:1.20.1500.20MapMan:16.8.1.2.3.1Gene3D:2.40.30.300Gene3D:3.40.50.300EntrezGene:8078772
UniProt:C5XMP5ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domEnsemblPlants:EES02351ProteinID:EES02351ProteinID:EES02351.1
GO:GO:0000003GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003724
GO:GO:0003824GO:GO:0004004GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005737GO:GO:0005829GO:GO:0006139
GO:GO:0006397GO:GO:0006401GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009653GO:GO:0009791GO:GO:0009908GO:GO:0009987GO:GO:0010093GO:GO:0016607
GO:GO:0016787GO:GO:0040029GO:GO:0055087GO:GO:0060149GO:GO:0070478InterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271
PFAM:PF08148PFAM:PF13234PIRSF:PIRSF005198PFscan:PS51192PFscan:PS51194PANTHER:PTHR12131
PANTHER:PTHR12131:SF6SMART:SM00487SMART:SM00490SMART:SM01142EnsemblPlantsGene:SORBI_3003G042400SUPFAM:SSF52540
unigene:Sbi.13976InterPro:Ski2-likeInterPro:Ski2_CUniParc:UPI0001A84FDCRefSeq:XP_002457231.1InterPro:rRNA_proc-arch_dom
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr3:-:3939524..3946926
Molecular Weight (calculated)
113036.0 Da
IEP (calculated)
6.548
GRAVY (calculated)
-0.336
Length
1004 amino acids
Sequence
(BLAST)
0001: MGEEAESTCK RKAPDSSAEE QPSSAPAQSQ SQADPAAKRR NLSRSCVHEV AVPKGYESAK DEAVHGTLAN PDFNGEMAKQ YPFNLDPFQS TSIACLERNE
0101: SVLVSAHTSA GKTVVAEYAI AMAFRDKQRV IYTSPLKALS NQKYRELSQE FTDVGLMTGD VTLHPNATCL VMTTEILRAM LYRGSEVIKE VAWVIFDEIH
0201: YMKDRERGVV WEESIIFLPP AIKMVFLSAT MSNATEFAEW ICSLHKQPCH VVYTDFRPTP LQHYVFPIGG SGLYLVVDEN GQFREDNFSK LQDSFAKQNN
0301: QLDGRKGGGP KASGRIAKGG SASGNSDIYR IVKMIMERKF QPVIIFSFSR RECEHHAMSM SKLDFNTEDE KECIEQVFRN AIGCLVEEDR SLPAIELMLP
0401: LLKRGIAVHH SGLLPIIKEL VELLFQEGLV KALFATETFA MGLNMPAKTV VFTSVKKWDG DTNRYIGSGE YIQMSGRAGR RGKDERGICV IMIDEKMEMS
0501: VIKDMVLGKP APLVSTFRLS YYTILNLMSR VEGQFTAEHV IRHSFHQFQY EKALPEIIQK ITRLEDEATF LDSSGETDLA EYHKLGLDIS ELEKKIMSEM
0601: IRPERALLYL VPGRLVRVRD GSTDWGWGVV VNVVKKPPVS GTLPPALSAS RSNNYIVDTL LHCSSNSSEN GSRSKPCPPR PGEKGEMHVV PVPLPLVSGL
0701: SSVRINIPPD LRPPEARQNI LFAVQELGKR YPQGLPKLHP INDMGIQEPE LVDLVHKLED LEQKQCSHRL HKSGQSDQEL SWYQRKADLN SEIQQLKSKM
0801: RDSQLQKFRD ELKNRSRVLK MLGHIDADGV LQLKGRAACL IDTGDELLIT ELMFNGTFND LDHHQVASLA SCFVPCDKSS EQIRLRNELS RPMTQLQEAA
0901: RKIAEVQKEC KLEVNVEEYV ESTCRPYLMD VIYCWSRGAT FAEVMEMTDI FEGSVIRLAR RLDEFLNQLR AAAEAVGEVN LEKKFEKASE SLRRGIMFSN
1001: SLYL
Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)
001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
Arabidopsis Description
HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.