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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
KXG21735

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G20960.1 KXG21735 AT5G05410.1 18552202
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d022286_P003 Maize plastid 98.53 98.44
EES04337 Sorghum cytosol 94.55 94.94
TraesCS6B01G034100.1 Wheat cytosol 90.74 90.87
TraesCS6A01G024900.1 Wheat nucleus 90.65 90.82
TraesCS6D01G028200.1 Wheat cytosol 90.7 90.74
HORVU6Hr1G004350.3 Barley cytosol, mitochondrion, nucleus 90.79 90.46
KXG37223 Sorghum cytosol 88.41 87.52
TraesCS7D01G199800.1 Wheat cytosol 59.35 83.82
TraesCS7A01G238700.1 Wheat cytosol 80.75 83.43
TraesCS7B01G103700.1 Wheat cytosol 82.77 83.3
HORVU7Hr1G040480.2 Barley cytosol, mitochondrion 81.3 82.51
GSMUA_Achr3P29700_001 Banana cytosol 69.52 82.45
Os03t0743800-00 Rice nucleus 80.06 81.48
VIT_05s0102g00480.t01 Wine grape cytosol 75.21 79.39
KRH13647 Soybean cytosol 77.77 77.74
KRH43818 Soybean nucleus 77.77 77.74
PGSC0003DMT400078069 Potato cytosol 77.13 77.41
Solyc06g082100.2.1 Tomato nucleus 69.16 76.75
AT1G20960.1 Thale cress cytosol 74.47 74.85
CDX76355 Canola cytosol 44.41 74.71
Bra012260.1-P Field mustard cytosol 74.38 74.25
Bra022718.1-P Field mustard cytosol 74.06 73.86
Bra020835.1-P Field mustard cytosol 69.48 72.64
Solyc06g071620.2.1 Tomato nucleus 66.96 72.54
CDY48648 Canola nucleus 34.05 72.21
AT2G42270.1 Thale cress cytosol 70.99 71.32
CDY31853 Canola nucleus 38.96 70.77
CDY01342 Canola cytosol 35.93 70.76
CDY56796 Canola cytosol 28.92 68.96
CDY22556 Canola cytosol 66.18 68.66
PGSC0003DMT400069435 Potato mitochondrion 7.33 68.38
CDY52687 Canola cytosol, mitochondrion 26.86 68.3
Bra008413.1-P Field mustard cytosol 29.1 67.84
CDY01343 Canola cytosol 10.04 67.38
CDY28773 Canola cytosol 10.04 67.38
CDY48646 Canola cytosol 10.04 67.38
CDY31854 Canola cytosol 10.04 67.38
Solyc06g065300.2.1 Tomato cytosol 18.29 60.55
CDX76356 Canola nucleus 10.54 58.08
CDY22275 Canola cytosol, nucleus, plasma membrane 27.86 57.3
KXG39883 Sorghum mitochondrion 38.82 40.64
EER87693 Sorghum cytosol 8.48 18.48
OQU85316 Sorghum nucleus 10.77 18.15
EES02351 Sorghum nucleus 8.07 17.53
KXG29518 Sorghum cytosol 9.9 15.75
OQU79067 Sorghum plastid 13.24 13.91
OQU85441 Sorghum plastid 7.56 13.87
CDY04587 Canola plastid 2.06 12.3
Protein Annotations
Gene3D:1.10.10.2530Gene3D:1.10.150.20Gene3D:1.10.3380.10MapMan:16.4.7.1.4Gene3D:2.60.40.150Gene3D:3.40.50.300
EntrezGene:8063540InterPro:AAA+_ATPaseInterPro:C2_domain_sfUniProt:C5X3C4ncoils:CoilInterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlants:EER99779ProteinID:EER99779ProteinID:EER99779.1GO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0005488GO:GO:0005524InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001
InterPro:IPR035892InterPro:Ig_E-setInterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF02889
PIRSF:PIRSF039073PFscan:PS51192PFscan:PS51194PANTHER:PTHR24075PANTHER:PTHR24075:SF5SMART:SM00382
SMART:SM00487SMART:SM00490SMART:SM00973EnsemblPlantsGene:SORBI_3002G391600SUPFAM:SSF158702SUPFAM:SSF46785
SUPFAM:SSF52540SUPFAM:SSF81296unigene:Sbi.12764InterPro:Sec63-domUniParc:UPI0001A83EA0InterPro:WH_DNA-bd_sf
RefSeq:XP_002463258.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr2:-:74430806..74439337
Molecular Weight (calculated)
246753.0 Da
IEP (calculated)
5.741
GRAVY (calculated)
-0.359
Length
2182 amino acids
Sequence
(BLAST)
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD SRPRDTHEPT GEPETLWGRI DPRSFGDRAV QNKPPELEEK LSKSRTKKSK RDAAAAADPA DLPRRDAKRR
0101: RRAASTQEVS VLSLTDDAVY KPQTKETRAA YEALLSLIQQ QLGGQPLDVL AGAADEVLAT LKNDKVKNPD KKKDIEQLLN PISSQLFDQL VSIGKLITDF
0201: HDAAAGDAAG VPSADGTDTT LDDDVGVAVE FEEDEDEESD FDQVQDDLDE DDEDDMAELN GPGGMQMGGE LDDDDMQNAN QGLAVNVQDI DAYWLQRKIS
0301: QAYGDGDIDA QQSQKLAEDI LKIIAEGDDR DVENRLVMLL DYEKFDLIKL LLRNRLKIVW CTRLARAEDQ EQRKKIEEEM ASDPSLAPIL EQLHATRASA
0401: KERQKNLEKS IRDEAKRLLN NDAGADGARD RRAAERDMES GWLKGQRQLL DLESLSFHQG GLFMANKKCE LPTGSFRTPH KGYEEVHVPA LKAKPYETSE
0501: KIVKISDMPE FARSAFDGMT QLNRVQSRVY DTALFKPDNI LLCAPTGAGK TNVAVLTILQ QIGLHMQDDG QFDNTKYKIV YVAPMKALVA EVVGNLSNRL
0601: AGYNVTVREL SGDQNLTKQQ IDETQIIVTT PEKWDIVTRK SGDRTYTQMV KLLIIDEIHL LHDNRGPVLE SIVARTVRQI ETTKEHIRLV GLSATLPNYE
0701: DVALFLRVRK ESLFYFDNSY RPCPLAQQYI GITVRKPLQR MQLMNEICYE KVMAAAGKHQ VLIFVHSRKE TAKTAKAIRD TALANDTVSR FLKNESASQE
0801: ILGTHAELVK NNDLKDLLPY GFAIHHAGMA RVDRELVEEL FADKHIQVLV STATLAWGVN LPAHTVIIKG TQIYNPEKGA WTELSPLDVM QMLGRAGRPQ
0901: YDTHGEGIIL TGHSELQFYL SLMNQQLPIE SQFISKLADQ LNAEIVLGTI QNAREACSWL GYTYLYIRML RNPTLYGLPA DILESDKTLD ERRADLIHSA
1001: ANLLDRNNLI KYDRKTGYFQ VTDLGRIASY YYISHGTIST YNEYLKPTMG DIELCRLFSL SEEFKYVGVR LDEKMELAKL LDRVPIPVKE SLEEPSAKIN
1101: VLLQAYISRL KLEGLSLSSD MVYIRQSAGR LLRALFEIVL KRGWAQLAEK ALNLCKMVDK QMWSVQTPLR QFTGIPKEIL MKLEKKELAW ERYYDLSSQE
1201: IGELIRYPKM GRQLHKCIHQ LPKLNLSAHV QPITRTVLGF ELTITPDFQW DDKVHGYVEP FWVIVEDNDG EYILHHEYFM LKKQYVDEDH TLNFTVPIYE
1301: PLPPQYFIRV VSDKWLGSQT ILPVCFRHLI LPEKYAPPTE LLDLQPLPVS ALRNARYEGL YSAFKHFNPI QTQVFTVLYN SDDSVLVAAP TGSGKTICAE
1401: FAILRNHQRA VSGESNMRVV YIAPIEGLAK ERYRDWERKF GEFAKVVELT GETAADLKLL DKGEIIISTP EKWDALSRRW KQRKHIQQVS LFIVDELHLL
1501: GSDKGHVLEV IVSRMRRISS HIGSNIRIVA LSASLANAKD LGEWIGATSH GLFNFPPAVR PVPLEIHIQG VDIANFEARM QAMTKPTYTA ITQHAKNSKP
1601: ALVYVPTRKH ARLTALDLCA YSSVEGAGTP FLLGSEDEMD TFTRGVEEET LKNTLKCGVG YLHEGLSELD QELVTQLFLG GRIQVCVASS TMCWGRPLPA
1701: HLVVVMGTQY YDGRENAHTD YPITDLLQMM GHASRPLQDN SGKCVILCHA PRKEYYKKFL FEAFPVESNL HHFLHDHMNA EVVVGVVENK QDAVDYLTWT
1801: FMYRRLTKNP NFYNLQGVSH RHLSDHLSEL VETVLNDLES SKCVAIEEDM YLKPLNLGLI ASYYYISYTT IERFSSMLTQ KTKVKGLLEI LASASEYAEL
1901: PGRPGEEEFI ERLVRHQRFS IEKPKYGDPH VKANALLQAH FSRHTVVGNL AADQREILLS AHRLLQAMVD VISSNGWLSL ALSAMELSQM VTQGMWDRDS
2001: VLLQVPHFTK DLARRCQENE GKPIESIFDL AEMGVDEMRD LLQLSNSQLQ DIIEFFKRFP NVDMTYEVRE GDDITAGDNV TVQVTLERDM TNVSSEVGPV
2101: HAPRFPKPKE EGWWLVIGDS STNQLLAIKR VALQKRARVK LEFSAPAEAG RKDYMIYLMS DSYLGCDQEY EFTVDVKDAG GD
Best Arabidopsis Sequence Match ( AT1G20960.1 )
(BLAST)
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
Arabidopsis Description
BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.