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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_05s0102g00480.t01 Wine grape cytosol 81.52 72.57
EER99779 Sorghum cytosol 82.45 69.52
Zm00001d022286_P003 Maize plastid 82.28 69.32
PGSC0003DMT400078069 Potato cytosol 81.85 69.27
KRH13647 Soybean cytosol 82.01 69.13
KRH43818 Soybean nucleus 81.9 69.03
Solyc06g082100.2.1 Tomato nucleus 73.75 69.02
TraesCS6A01G024900.1 Wheat nucleus 81.25 68.64
TraesCS6B01G034100.1 Wheat cytosol 81.2 68.56
CDY48648 Canola nucleus 38.26 68.42
TraesCS6D01G028200.1 Wheat cytosol 81.09 68.41
HORVU6Hr1G004350.3 Barley cytosol, mitochondrion, nucleus 80.98 68.04
EES04337 Sorghum cytosol 79.46 67.28
AT1G20960.1 Thale cress cytosol 78.21 66.28
CDX76355 Canola cytosol 46.25 65.61
Bra012260.1-P Field mustard cytosol 77.34 65.1
CDY56796 Canola cytosol 32.34 65.03
TraesCS7D01G199800.1 Wheat cytosol 54.57 64.98
Bra022718.1-P Field mustard cytosol 77.07 64.81
Bra008413.1-P Field mustard cytosol 32.55 64.0
TraesCS7B01G103700.1 Wheat cytosol 75.11 63.75
Solyc06g071620.2.1 Tomato nucleus 69.73 63.7
KXG37223 Sorghum cytosol 75.82 63.29
TraesCS7A01G238700.1 Wheat cytosol 72.55 63.21
HORVU7Hr1G040480.2 Barley cytosol, mitochondrion 73.75 63.12
Bra020835.1-P Field mustard cytosol 71.58 63.1
Os03t0743800-00 Rice nucleus 73.15 62.78
AT2G42270.1 Thale cress cytosol 73.04 61.88
PGSC0003DMT400069435 Potato mitochondrion 7.72 60.68
CDY22556 Canola cytosol 68.7 60.1
CDY31853 Canola nucleus 38.64 59.2
CDY01342 Canola cytosol 35.0 58.12
CDX76356 Canola nucleus 12.34 57.32
CDY48646 Canola cytosol 10.0 56.62
CDY01343 Canola cytosol 10.0 56.62
CDY28773 Canola cytosol 10.0 56.62
CDY31854 Canola cytosol 10.0 56.62
CDY52687 Canola cytosol, mitochondrion 25.82 55.36
CDY22275 Canola cytosol, nucleus, plasma membrane 30.76 53.35
Solyc06g065300.2.1 Tomato cytosol 18.04 50.38
GSMUA_Achr8P28180_001 Banana cytosol 39.18 35.94
GSMUA_Achr1P12000_001 Banana cytosol, nucleus, plastid 12.55 20.92
GSMUA_Achr2P17890_001 Banana cytosol, nucleus, plastid 8.64 15.71
GSMUA_Achr9P03710_001 Banana cytosol 10.33 14.4
GSMUA_Achr3P05450_001 Banana nucleus 8.1 13.8
GSMUA_Achr8P22600_001 Banana plastid 8.59 13.1
GSMUA_Achr11P... Banana nucleus 13.7 12.33
CDY04587 Canola plastid 1.41 7.1
Protein Annotations
Gene3D:1.10.10.2530Gene3D:1.10.150.20Gene3D:1.10.3380.10Gene3D:2.60.40.150Gene3D:3.40.50.300MapMan:35.1
InterPro:AAA+_ATPaseInterPro:C2_domain_sfncoils:CoilInterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0005488GO:GO:0005524EnsemblPlantsGene:GSMUA_Achr3G29700_001EnsemblPlants:GSMUA_Achr3P29700_001EnsemblPlants:GSMUA_Achr3T29700_001
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR035892InterPro:Ig_E-set
UniProt:M0SIY6InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF02889PIRSF:PIRSF039073
PFscan:PS51192PFscan:PS51194PANTHER:PTHR24075PANTHER:PTHR24075:SF5SMART:SM00382SMART:SM00487
SMART:SM00490SMART:SM00973SUPFAM:SSF158702SUPFAM:SSF46785SUPFAM:SSF52540SUPFAM:SSF81296
InterPro:Sec63-domUniParc:UPI000295F661InterPro:WH_DNA-bd_sfSEG:seg::
Description
Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Source:GMGC_GENE;Acc:GSMUA_Achr3G29700_001]
Coordinates
chr3:-:28735362..28743203
Molecular Weight (calculated)
210059.0 Da
IEP (calculated)
5.813
GRAVY (calculated)
-0.379
Length
1840 amino acids
Sequence
(BLAST)
0001: MAHLGGGAEA HARFKQYEYR ANSSLVLTTD SRPRDTHEPT GEPESLWGKI DPKSFGDRAF RGKPLELEEK IKKSKKKKER EPALEPEQKK DSKRRRIQEE
0101: SVLSLTDDAV YQPKTKETRA AYEALLSVIQ QQFGGQPQDI LSGAADEVLV VLKNEKIKNP DKKKEIEKLL NPISNQVFDQ LVSIGRLITD YQDAGVAADS
0201: AAANGNGEAL DDIGVAVEFE EDEEEEESDY DQVQEESEDD DDGQESNAAG AMQMGGIDDE DMEEANEGQT INVQDIDAYW LQRKISQAYE EIDPQQSQKL
0301: AEEVLKILAE GDDRDVENRL VMLLDYDKFE LIKLLLRNRL KIVWCTRLAR AEDQDQRKKI EEEMSNMEKS IREEARRLKD EHGGGDNDRD RRVVDRDTDS
0401: GWLKGQCQLL DLDSIAFHQA FEGMKQLNRV QSMVYKTAFT SPENILLCAP TGAGKTNVAM LAILHQIGLH RRDGVLDNSK YKIVYVAPMK ALVAEVVGNL
0501: SHRLKSYNIV VRELSGDQNL TRQQIEETQI IVTTPEKWDI VTRKSGDRTY TQLVKLLIID EIHLLHDNRG PVLESIVART LRQTEATKEL IRLVGLSATL
0601: PNYEDVALFL RVTKPSGILH FDNSYRPCPL AQQYIGITIK KPLQRFQLMN EICYEKVMAA AGKHQVLIFV HSRKETAKTA RAIRDTALAN DTLSRNDLKD
0701: LLPYGFAIHH AGMARVDRDL VEELFSDGHV QVLVSTATLA WGVNLPAHTV IIKGTQIYNP EKGAWTELSP LDVMQMLGRA GRPQYDSYGE GIILTGHSEL
0801: QYYLSLMNQQ LPIESQFVSK LADQLNAEIV LGTVQNAREA CNWIGYTYLY VRMVRNPTLY GLSADILERD KLLEERRADL IHTAANILDK NNLVKYDRKS
0901: GYFQATDLGR IASYYYITHG TISTYNEYLK PTMGDIELFR LFSLSEEFKY VTVRQDEKME LAKLLDRVPI PVKESLEEPS AKINVLLQAY ISQLKLEGLS
1001: LTSDMVFIKQ SAGRLIRSLF EIVLKRGWAQ LAEKALNLCK MVDKRMWSVQ TPLRQFTGIP NEILMKLEKK DLSWERYYDL SSQEIGELIR YPKMGRQLHK
1101: CIHQLPKLNL LAHVQPITRT VLGFELTITP DFQWDDAVHG YVEPFWVIVE DNDGEYILHH EYFMLKKQYI DEDHTLNFTV PIYEPLPPQY FIRVVSDKWL
1201: VTALRNPAYE ALYDAFKHFN PIQTQVFTVL YNTDDNVLVA APTGSGKTIC AEFALLRNHQ KGPDSIMRAV YIAPIEAVAK ERYRDWEEKF GKRLGIRLHL
1301: IGGEMGPILE IIVSRMRRIA MPLEIHIQGV DISNFEARMQ AMTKPTYTAI VQHSKNGKPA LVFVPTRKHA RLTALDLCTY SHADRGERPS FLLGSGEEMN
1401: TFISGIKDDT LKGTLALGVG YLHEGLNEFD QEVVIQLFLG GRIQVCVATS LMCWGRSLPS HLVVVMGTQY YDGRENAHTD YPITDLLQMM GHASRPLKDN
1501: SGICVILCHA PRKEYYKKFL YEAFPNKQDA VDYLTWTFMY RRLTKNPNYY NLQGVSHRHL SDHLSELVEN VLSDLESSKC VAIEEDMYLK PLNLGLIASY
1601: YYISYTTIER FKLIRKLINH QRFSFENPKC TDPHVKANVL LQAHFSRHTV VGNLAADQRE VLLSAHRLLQ AMVDVISSNG WLSLALSTME LSQMVTQGMW
1701: ERDSMLLQIP HFTKELAKRC QENPGRSIET VFDLVEMEDD ERRDLLQMLD SQLLDIARFC NRFPNIDMTY EVLDDDDLLA IKRVALQRKA KVKLVFTAPA
1801: EVGKKAFTIY FMCDSYLGCD QEYNFNIDVK EGGEDGNRSD
Best Arabidopsis Sequence Match ( AT1G20960.1 )
(BLAST)
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
Arabidopsis Description
BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.