Factsheet for GSMUA_Achr11P12160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037575	Potato	cytosol, extracellular	6.27	80.0
CDY51661	Canola	nucleus	49.78	65.36
Solyc08g068120.1.1	Tomato	cytosol, nucleus, plastid	43.61	61.41
HORVU1Hr1G065680.1	Barley	nucleus	50.42	60.8
Os12t0291000-00	Rice	nucleus	59.91	59.68
TraesCS1A01G323500.1	Wheat	plastid	58.69	58.12
TraesCS1D01G324400.1	Wheat	plastid	58.59	58.02
TraesCS1B01G336400.1	Wheat	plastid	58.84	57.73
VIT_04s0008g03960.t01	Wine grape	nucleus	60.79	57.55
HORVU0Hr1G026710.1	Barley	plastid	53.94	57.16
OQU79067	Sorghum	plastid	57.91	56.93
Zm00001d023796_P033	Maize	nucleus, plastid	57.71	56.3
CDY23339	Canola	nucleus	54.77	55.64
KRH16213	Soybean	nucleus	58.0	55.19
Bra040938.1-P	Field mustard	nucleus	56.58	54.35
AT4G32700.2	Thale cress	nucleus	56.93	53.99
Bra011372.1-P	Field mustard	nucleus	56.73	50.41
CDY51662	Canola	nucleus	17.57	46.74
Solyc08g068110.1.1	Tomato	nucleus	14.0	40.57
GSMUA_Achr1P12000_001	Banana	cytosol, nucleus, plastid	9.35	17.3
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	7.44	15.02
GSMUA_Achr3P29700_001	Banana	cytosol	12.33	13.7
GSMUA_Achr9P03710_001	Banana	cytosol	8.52	13.19
GSMUA_Achr8P22600_001	Banana	plastid	7.73	13.1
GSMUA_Achr3P05450_001	Banana	nucleus	6.66	12.59
GSMUA_Achr8P28180_001	Banana	cytosol	10.96	11.17

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	Gene3D:1.10.3380.20	Gene3D:1.20.1060.10	MapMan:14.2.2
Gene3D:3.30.70.370	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA-dir_DNA_pol_A_palm_dom	InterPro:DNA_polymerase_A
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261
GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009640	GO:GO:0009653	GO:GO:0009791	GO:GO:0009933	GO:GO:0009987	GO:GO:0010468
GO:GO:0016740	GO:GO:0051301	GO:GO:0071897	GO:GO:1902749	GO:GO:1990067	GO:GO:2000011
EnsemblPlantsGene:GSMUA_Achr11G12160_001	EnsemblPlants:GSMUA_Achr11P12160_001	EnsemblPlants:GSMUA_Achr11T12160_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	UniProt:M0RRJ6	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00476
PRINTS:PR00868	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10133	PANTHER:PTHR10133:SF27	SMART:SM00482
SMART:SM00487	SMART:SM00490	SUPFAM:SSF158702	SUPFAM:SSF52540	SUPFAM:SSF56672	UniParc:UPI00029545A7
SEG:seg	:	:	:	:	:

Description

DNA polymerase I family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G12160_001]

Coordinates

chr11:-:11059381..11097069

Molecular Weight (calculated)

225084.0 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.244

Length

2043 amino acids

Sequence
(BLAST)

0001: MASDPSRARI DQVSGNPCFP FSYSSLFLVR SPSRQDLELI ACSSFGNQFF ASRKRKTPLP KDGKPDKESR SPVAGSPGAK GTLDGFLARS PDVVSVAGQE
0101: SGSGDHLDFV RPPSAVVVAE KDSPEAVLAC ETSNEGNLEL KRFAANFLSL YCSDLPSAES VPLEPDQKGQ KRNGSPSLVA VCSKTLSKRQ CALDHSDMLV
0201: EAETTSHAFP EPPTHKLHPV AEEVVNNKVE LNMRCVKLCS EIDGVVSLRR CTATPDGSFT KTRHYMIGMC CNNRVTDDTP KSALRCSIFS PGDEFWSEAI
0301: QVADGLLPAA SNLPEGLQFS KCGTSDNKLR TDESSCRATN GVLDSGSMAS KVSQKIGEKP IKHLDSLLFK KHSEDMENCL APKENSDFSF CNSGGSSSST
0401: GKSYQTGAGS DLDACPGKGN LPTQENNMGQ IRSVRLPVCL PGTGYDSANL ERKQKNKLIA NGNYEEFGTP SSSVPPKYRL QLHSWLPPEV CNIYKRKGIS
0501: ELYPWQVECL LVDGVLEKRN LVYCATTSSG KSFVAEILML RQVLSTGKMA LLVLPYVSLC AEKVHFIICA EHLELLLEPL GKHVRSFYGN QGGGSLPKDT
0601: SVAVCTIEKA NSLINRLLEE GRLSELGIIV IDELHMVADQ HRGYLLELML TKLRYAAGEG SSDSSNGESL GSSGASSGKA DPAHGLQIVG MSATMPNVAA
0701: VADWLQAALY QTDFRPVPLE EFVKVGNTIF DKKMNVVRII SKTADLGGKD PDHIIELCNE VVQDGHSVLL FCSSRKGCES TARHVARFSK KFSDGIHEDC
0801: EFNDASAAIE ALRRSPAGLD PILEQTLPSG VAYHHAGLTV EEREIIETCY RKGLVRVLTA TSTLAAGVNL PARRVIFRQP RVGRDFIDGT RYRQMAGRAG
0901: RTGIDTKGES ILICKADEAK RIAAILNDCC PPLHSCLSED KNGMTHAIME VVAGGIVQTA HDINRYKFLK WNEDTKLYST TPLGRAAFGS SLTPEESLVV
1001: LDDLLRAREG FVLASDLHLV YLVTPINVEV EPDWELYYER FMEMCALDQS VGNRVGVTEP FLMRMAHGAP MPVQNRLRGK KSGLNEKFQT RNSEVDNGML
1101: SNEQTLRVSK RFYVALMLSR LVQEVPVSDV CEAFRVARGM LQALQESAGR FALMVSVFCE RLGWHDLQGL VAKFQNRVSF GVRAEIVELT TIPHVKGSRA
1201: RALYKAGLRT PLAIAEASVT EIVKAMFDSS AWTHQDDSKL RRMQFGVAKK IKNSARKIVL DQAEESRLAA FSALKSLGVH VPQFSRPLLS DIVESPGGGK
1301: MPCFGEDPSK DTMKAAGETT NHANAAIEMR VECNPGPGDK DGLNGNTSNK KSEGPISASS FPGGFDCFLD KWASVNEFCF DLHFLKRPNS QSSVFYEVFG
1401: LAVCWDKSPV YYCNLSKDLA ACSNLDKFDI WELARSRWNR ITKIMGQDGV RKTTWNLKIQ IQALKFPCAS VQKIGWLNGD YIKWDDIKII DDSFILLPSV
1501: SVHNGVDLCL VSWILWPDEE SKSTPNLEKV VKRRLSNEAA AAANRDGRWR NQMRKAAHNG CCRRVAQVRA LGSVLWKLLV AEGLVEVLMK IENPLVAVLA
1601: DMEHWGMAVD MEACLRERHV LMRKLKELEK EAYKLAGMAF SLYTAADIAN VLYTHLKLPI PQGRNKGKLH PSTDKHSLDQ LRGQHPIISV IKEHRTLSKL
1701: LNSTLGSICS RAQLCVKSQK YKIQGHWLQT STATGRLSME EPNLQCVQHM VVFTTHRVDQ NSSSSSECDH HLINARDIFV PTQDNWLLLT ADYSQIELRI
1801: MAHFSKDLAL IELLSKPDGD VFTMIASRWT CKPESAINSE ERDYTKRLIY GILYGMGANT LGEQLQCSPE EAAEKIQSFK NSFPGVSAWL SEAVASCRQK
1901: GYVETLMGRK RFLSKIKFGN SKEKAKAQRQ AVNSICQGSA ADIIKMAMIN IHSVIVDGRS NGNLNNDLAV KLSNVKGRCR IILQVHDELV LEVDPGIIKE
2001: AGILLQMNME NAASLLVPLR VKLMVGKAWG SLEPFRVEPS NSH

Best Arabidopsis Sequence Match ( AT4G32700.2 )
(BLAST)

0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD

Arabidopsis Description

TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.