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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51661 Canola nucleus 70.51 91.13
Bra040938.1-P Field mustard nucleus 95.72 90.5
CDY51662 Canola nucleus 33.52 87.76
CDX75273 Canola nucleus 81.35 81.39
CDX68881 Canola nucleus 83.99 81.36
PGSC0003DMT400037575 Potato cytosol, extracellular 6.36 80.0
AT4G32700.2 Thale cress nucleus 84.93 79.29
Solyc08g068120.1.1 Tomato cytosol, nucleus, plastid 46.1 63.89
VIT_04s0008g03960.t01 Wine grape nucleus 62.95 58.67
KRH16213 Soybean nucleus 60.47 56.64
HORVU1Hr1G065680.1 Barley nucleus 46.84 55.61
GSMUA_Achr11P... Banana nucleus 55.64 54.77
Os12t0291000-00 Rice nucleus 54.75 53.68
TraesCS1A01G323500.1 Wheat plastid 54.15 52.79
TraesCS1D01G324400.1 Wheat plastid 54.0 52.64
TraesCS1B01G336400.1 Wheat plastid 54.3 52.45
HORVU0Hr1G026710.1 Barley plastid 49.58 51.71
OQU79067 Sorghum plastid 53.21 51.49
Zm00001d023796_P033 Maize nucleus, plastid 53.06 50.96
Solyc08g068110.1.1 Tomato nucleus 16.36 46.67
CDY49767 Canola nucleus 9.9 17.59
CDY03992 Canola nucleus 9.85 17.44
CDY56796 Canola cytosol 7.91 17.38
CDY45149 Canola nucleus 3.08 16.4
CDY48648 Canola nucleus 8.11 15.84
CDY30903 Canola nucleus 7.51 15.3
CDY65064 Canola nucleus 7.51 15.24
CDY44724 Canola cytosol 7.41 15.08
CDY22275 Canola cytosol, nucleus, plasma membrane 7.96 15.08
CDY31854 Canola cytosol 2.44 15.08
CDY01343 Canola cytosol 2.44 15.08
CDY28773 Canola cytosol 2.44 15.08
CDY48646 Canola cytosol 2.44 15.08
CDY41593 Canola cytosol 7.41 15.04
CDY45148 Canola endoplasmic reticulum 4.48 14.47
CDY38782 Canola plastid 7.96 13.73
CDY22556 Canola cytosol 14.32 13.69
CDY11624 Canola plastid 7.71 13.45
CDY47017 Canola cytosol 7.91 13.2
CDX76355 Canola cytosol 8.5 13.18
CDX86107 Canola nucleus 8.45 12.64
CDX99082 Canola cytosol 7.46 12.55
CDY42855 Canola nucleus, plastid 11.69 11.08
CDY33604 Canola cytosol 1.59 10.88
CDY47018 Canola cytosol 3.33 9.4
CDY52687 Canola cytosol, mitochondrion 3.63 8.51
CDY31853 Canola nucleus 4.97 8.33
CDY04587 Canola plastid 1.49 8.2
CDY01342 Canola cytosol 4.23 7.67
CDX75272 Canola nucleus 0.55 6.43
CDX68879 Canola cytosol, mitochondrion, nucleus 0.55 6.4
CDX76356 Canola nucleus 1.24 6.31
Protein Annotations
KEGG:00230+2.7.7.7KEGG:00240+2.7.7.7Gene3D:1.10.150.20Gene3D:1.10.3380.20Gene3D:1.20.1060.10MapMan:14.2.2
Gene3D:3.30.420.10Gene3D:3.30.70.370Gene3D:3.40.50.300GO:A0A078GD95UniProt:A0A078GD95EnsemblPlants:CDY23339
ProteinID:CDY23339ProteinID:CDY23339.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domInterPro:DNA-dir_DNA_pol_A_palm_domInterPro:DNA_polymerase_A
GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003887
GO:GO:0005488GO:GO:0005524GO:GO:0006139GO:GO:0006259GO:GO:0006260GO:GO:0006261
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0071897
EnsemblPlantsGene:GSBRNA2T00021929001InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR036397
InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF00476PRINTS:PR00868PFscan:PS51192
PFscan:PS51194PANTHER:PTHR10133PANTHER:PTHR10133:SF27InterPro:RNaseH_sfSMART:SM00482SMART:SM00487
SMART:SM00490SUPFAM:SSF158702SUPFAM:SSF52540SUPFAM:SSF56672UniParc:UPI0004EE8776SEG:seg
Description
BnaA08g12070DBnaA08g12070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GD95]
Coordinates
chrLK032142:+:594239..606310
Molecular Weight (calculated)
222501.0 Da
IEP (calculated)
8.085
GRAVY (calculated)
-0.395
Length
2011 amino acids
Sequence
(BLAST)
0001: MYHGGEEQRS YIYCSKQGKK KLNDGQVFFS GGYSSSSSSA PMDSDSSRSR IDQFYVSKKR KHPSPNLKSG RNEKHVKVTG ERSPGDKGTL DSYLKASSLE
0101: DDKSTTNRCL NQQSGSQVLD KEGVATVATD GLLCANQKDN SDLRDFATGF LSLYCSEVRS VVGPPPHQNA NERKRPSSSS LLAQDMQVSH KMRCDSQNIP
0201: SLDELAHPLG SKPESISDKR DTSVSDPMQK IPSNQSAEIS MGLRKCTKAP ESSTHLTECH TPGSVVKSRP VGTPKSGSGS IMFSPGDSFW NEAILFADGL
0301: SMPTENSGSV EAKDGGQNSE KADNCSENLK KSLGLDKSRV NDKDAIGYSK VGEKHGRDFN REASPLPVKN LELLFQDKKT NGGTREQCAS LDQINITRGK
0401: ITVSESVLVE NKERGTLDIA SNAQANKHLI GRKYPEPEGK QVLVCQDNHS VRSVSMISNM RKTADSSESE ESYTPSSSHH NKDGLSLSTW LPSEVCSVYN
0501: KKGISKLYPW QVECLQVDGV LEKRNLVYCA STSAGKSFVA EVLMLRRVIT TGKMALLVLP YVSICAEKAE HLELLLEPLG KQVRSYFGNQ GGGTLPKGTS
0601: VAVCTIEKAN SLINRLLEEG RLSELGIIVI DELHMVGDQH RGYLLELMLT KLRYAAGEGS SESSSGESSG NSSGKIDPTH GLQIVGMSAT MPNVGAVADW
0701: LQAALYQTEF RPVPLEEYIK VGNTIYNKKM EVVRTIPKAA DMGGKDPDHI IELCNEVVQE GNSVLIFCSS RKGCESTARH ISKLIKKVVI DVDREQSEFM
0801: DIQSAIDALR RSPSGVDPVL EETLPSGVAY HHAGLTVEER EIVETCYRKG LVRVLTATST LAAGVNLPAR RVIFRQPMIG RDFLDGTRYK QMAGRAGRTG
0901: IDTKGESVLI CKPGELKRIM ALLNESCPPL ESCLSEDKNG MTHAILEVVA GGIVQTAKDI HRYVRCTLLN STKPFQDVVK SAQDSLRWLC HRKFLEWNEE
1001: TKLYTTTPLG RGSFGSSLCP EESLIVLDDL LRARDGLVMA SDLHLVYLIT PINVGVEPNW ELYYERFMEL SPLEQSVGNR VGVVEPFLMR MAHGATVRTL
1101: KKPQDVNKKL RGEYNNRHGS TSSKMLSDEE MLRVCKRFFV ALILSKLVQE ASVSEVCEAY KVARGMVQAL QENAGRFSSM VSVFCERLGW HDLEGLVAKL
1201: QNRVSFGVRA EIVELTSIPY IKGSRARALY KAGLRTCQAI AEASIPEIVK ALFETSAWAE EGTGQRRIHL GLAKKIKNGA RKIVLEKAEE ARAAAFSAFK
1301: SLGLDVRDLS NPLALAPARS PNGDISGGSV GLNEPQHIPG QSRMEGHMER GNFDTDSNRE NPMDVAGTTL EGTSEIKNED DAEQQLVRNA QVPLSNKDNA
1401: VEKEVLGTQN MLDVIKARWN RISKIMGNEE TRKFTWNLKN QIQVLKSPAI SIQRCARLNI AEVVRDHELV DGSWLVMLPL RISHTIDMSI VSWILWPDEE
1501: RHSNPNIDKE VKKRLSPEAA EAANRSGRWR NQIRRVAHNG CCRRVAQTRA LCSALWKILV SEELIEALTT TEMPLVNVLA DMELWGIGVD IEGCLKARNV
1601: LRDKLRSLEK KAFELAGMTF SLHSPADISN VLFRQLKLPI PENHNKGKLH PSTDKHCLDL LRNEHPVVPV IKEHRTLAKL LNSTLGSICS LAKLRLSTQR
1701: YTLHGHWLQT STATGRLSIE EPNLQSVEHE VEFILDKSGK EDRYKINARD FFVPTQENWL LLTADYSQIE LRLMAHFSRD SSLIAQLSQP EGDVFTMIAA
1801: KWTGKTEDTV GPHDRDQTKR LIYGILYGMG ANTLAEQLEC SSDEAKEKIR SFKSSFPAVT SWLNETVSFC QEKGYIQTLK GRRRFLSKIK FGNAKEKSKA
1901: QRQAVNSVCQ GSAADIIKIA MINIYSAISE DVNTSASSSS TEARCHMLKG RCRILLQVHD ELVLEVDPSY AKEAAMLLQS SMENAVSLLV PLHVKLKIGK
2001: TWGSLEPLQA D
Best Arabidopsis Sequence Match ( AT4G32700.2 )
(BLAST)
0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD
Arabidopsis Description
TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.