Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68879 | Canola | cytosol, mitochondrion, nucleus | 99.42 | 98.84 |
| CDY23339 | Canola | nucleus | 6.43 | 0.55 |
| CDY44724 | Canola | cytosol | 0.58 | 0.1 |
| CDY41593 | Canola | cytosol | 0.58 | 0.1 |
| CDY47018 | Canola | cytosol | 0.0 | 0.0 |
| CDY38782 | Canola | plastid | 0.0 | 0.0 |
| CDY42855 | Canola | nucleus, plastid | 0.0 | 0.0 |
| CDY45148 | Canola | endoplasmic reticulum | 0.0 | 0.0 |
| CDY45149 | Canola | nucleus | 0.0 | 0.0 |
| CDY47017 | Canola | cytosol | 0.0 | 0.0 |
| CDY31854 | Canola | cytosol | 0.0 | 0.0 |
| CDY48646 | Canola | cytosol | 0.0 | 0.0 |
| CDY48648 | Canola | nucleus | 0.0 | 0.0 |
| CDY49767 | Canola | nucleus | 0.0 | 0.0 |
| CDY51661 | Canola | nucleus | 0.0 | 0.0 |
| CDY51662 | Canola | nucleus | 0.0 | 0.0 |
| CDY52687 | Canola | cytosol, mitochondrion | 0.0 | 0.0 |
| CDY56796 | Canola | cytosol | 0.0 | 0.0 |
| CDY65064 | Canola | nucleus | 0.0 | 0.0 |
| CDY03992 | Canola | nucleus | 0.0 | 0.0 |
| CDX68881 | Canola | nucleus | 0.0 | 0.0 |
| CDX75273 | Canola | nucleus | 0.0 | 0.0 |
| CDX76355 | Canola | cytosol | 0.0 | 0.0 |
| CDX76356 | Canola | nucleus | 0.0 | 0.0 |
| CDX86107 | Canola | nucleus | 0.0 | 0.0 |
| CDX99082 | Canola | cytosol | 0.0 | 0.0 |
| CDY01342 | Canola | cytosol | 0.0 | 0.0 |
| CDY01343 | Canola | cytosol | 0.0 | 0.0 |
| CDY33604 | Canola | cytosol | 0.0 | 0.0 |
| CDY04587 | Canola | plastid | 0.0 | 0.0 |
| CDY11624 | Canola | plastid | 0.0 | 0.0 |
| CDY22275 | Canola | cytosol, nucleus, plasma membrane | 0.0 | 0.0 |
| CDY22556 | Canola | cytosol | 0.0 | 0.0 |
| CDY28773 | Canola | cytosol | 0.0 | 0.0 |
| CDY30903 | Canola | nucleus | 0.0 | 0.0 |
| CDY31853 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX75272 | EnsemblPlantsGene:GSBRNA2T00121140001 | Gene3D:1.10.490.10 | GO:A0A078CEL0 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0019825 | GO:GO:0020037 | InterPro:Globin-like_sf | InterPro:Globin/Proto | InterPro:Hemoglobin_trunc | InterPro:IPR012292 |
| PANTHER:PTHR10681 | PANTHER:PTHR10681:SF52 | PFAM:PF01152 | ProteinID:CDX75272 | ProteinID:CDX75272.1 | SEG:seg |
| SUPFAM:SSF46458 | UniParc:UPI0004EEC66A | MapMan:35.1 | : | : | : |
Description
BnaA01g04300D
Coordinates
chrLK031804:+:427283..428992
Molecular Weight (calculated)
19798.0 Da
IEP (calculated)
5.265
GRAVY (calculated)
-0.744
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSLQEKASA WSGVDQADAF AIDESNLFEK LGLQSFINLS TNFYTRVYDD EEEWFRSMFA NSKKEDAIQN QYEFFVQRMG GPPLYSQRKG HPALIGRHRP
101: FPVTHEAAER WLQHMQNAMD ESVDIDQDSK VKMMNFFRHT AFFLVAGNEL QNQNQNNQVA CKHAANKPAE E
101: FPVTHEAAER WLQHMQNAMD ESVDIDQDSK VKMMNFFRHT AFFLVAGNEL QNQNQNNQVA CKHAANKPAE E
001: MQSLQDKASV LSGVDQAEAF AIDESNLFDK LGLQTFINLS TNFYTRVYDD EEEWFQSIFS NSNKEDAIQN QYEFFVQRMG GPPLYSQRKG HPALIGRHRP
101: FPVTHQAAER WLEHMQNALD DSVDIDQDSK IKMMKFFRHT AFFLVAGNEL KNQNEKPKHK PQCACKHAAN KPAEE
101: FPVTHQAAER WLEHMQNALD DSVDIDQDSK IKMMKFFRHT AFFLVAGNEL KNQNEKPKHK PQCACKHAAN KPAEE
Arabidopsis Description
GLB3GLB3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2G3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.