CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44724	Canola	cytosol	98.79	99.09
AT2G06990.1	Thale cress	nucleus	91.32	90.95
VIT_11s0065g00340.t01	Wine grape	cytosol	82.04	81.71
KRH41401	Soybean	nucleus	79.72	80.94
KRH60115	Soybean	cytosol	78.51	80.45
Solyc05g047520.2.1	Tomato	nucleus	75.48	79.91
PGSC0003DMT400035614	Potato	cytosol	79.52	79.12
Solyc12g017860.1.1	Tomato	nucleus	73.76	77.77
PGSC0003DMT400052548	Potato	cytosol	76.08	77.02
EES02351	Sorghum	nucleus	76.19	75.2
Zm00001d008777_P008	Maize	nucleus	75.88	74.75
TraesCS4A01G216300.1	Wheat	cytosol	75.68	74.7
TraesCS4D01G091400.1	Wheat	cytosol	75.88	74.31
HORVU2Hr1G028060.7	Barley	cytosol	75.38	74.25
Os11t0176200-01	Rice	nucleus	75.08	74.18
TraesCS2D01G159900.1	Wheat	cytosol	75.18	74.06
TraesCS2B01G179600.1	Wheat	cytosol	75.18	74.06
TraesCS2A01G154400.1	Wheat	cytosol	75.18	73.54
HORVU4Hr1G018990.9	Barley	plastid	74.37	71.07
GSMUA_Achr3P05450_001	Banana	nucleus	75.68	69.44
TraesCS4B01G094600.1	Wheat	nucleus	75.48	68.25
CDY45149	Canola	nucleus	20.79	54.5
CDY30903	Canola	nucleus	46.82	47.01
CDY65064	Canola	nucleus	46.82	46.82
CDY45148	Canola	endoplasmic reticulum	26.44	42.12
CDY33604	Canola	cytosol	8.48	28.57
CDX99082	Canola	cytosol	31.48	26.11
CDX86107	Canola	nucleus	34.21	25.2
CDY38782	Canola	plastid	23.31	19.83
CDY11624	Canola	plastid	23.01	19.79
CDY56796	Canola	cytosol	12.51	13.55
CDY22275	Canola	cytosol, nucleus, plasma membrane	12.61	11.78
CDY03992	Canola	nucleus	12.41	10.84
CDY49767	Canola	nucleus	12.31	10.79
CDY48648	Canola	nucleus	11.0	10.59
CDY47017	Canola	cytosol	11.81	9.71
CDX76355	Canola	cytosol	11.91	9.1
CDY51661	Canola	nucleus	14.03	8.93
CDY22556	Canola	cytosol	17.15	8.08
CDY51662	Canola	nucleus	6.26	8.07
CDY23339	Canola	nucleus	15.04	7.41
CDX75273	Canola	nucleus	14.63	7.21
CDY42855	Canola	nucleus, plastid	15.04	7.02
CDX68881	Canola	nucleus	14.63	6.98
CDY04587	Canola	plastid	2.12	5.74
CDY48646	Canola	cytosol	1.72	5.23
CDY01343	Canola	cytosol	1.72	5.23
CDY31854	Canola	cytosol	1.72	5.23
CDY28773	Canola	cytosol	1.72	5.23
CDY31853	Canola	nucleus	6.05	5.0
CDY52687	Canola	cytosol, mitochondrion	3.53	4.08
CDY47018	Canola	cytosol	2.62	3.65
CDY01342	Canola	cytosol	4.04	3.61
CDX76356	Canola	nucleus	0.91	2.27
CDX75272	Canola	nucleus	0.1	0.58
CDX68879	Canola	cytosol, mitochondrion, nucleus	0.1	0.58

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	GO:A0A078HXY9
UniProt:A0A078HXY9	EnsemblPlants:CDY41593	ProteinID:CDY41593	ProteinID:CDY41593.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003724	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006401	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00073240001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148
PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF6
SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C
UniParc:UPI0004EF334B	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:	:

Description

BnaC05g43300DBnaC05g43300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXY9]

Coordinates

chrLK032501:-:139083..144067

Molecular Weight (calculated)

111170.0 Da

IEP (calculated)

6.668

GRAVY (calculated)

-0.296

Length

991 amino acids

Sequence
(BLAST)

001: MSTIMESPET LGKRKASESS KLSDETPTTK RRSSQKRACV HEVAVPNGYT PTKEEAIHGT LDNPLYNGDM AKTYPFQLDP FQSISVACLE RKESILVSAH
101: TSAGKTAVAE YAIAMAFRDK QRVIYTSPLK ALSNQKYREL QHEFHDVGLM TGDVTISPNA SCLVMTTEIL RAMLYRGSEV LKEVAWVIFD EIHYMKDRER
201: GVVWEESIIF LPPAIKMVFL SATMSNATEF AEWICYLHKQ PCHVVYTDFR PTPLQHYAFP MGGSGLYLVV DENEQFREAN FIKMHDTFPK PKSEGKKSAN
301: GKSGGRGGAK GGGGGGGGGD SDVYKIVKMI MERKFQPVII FSFSRRECEN HALSMSKLDF NTEEEKSTVE EVFNNAMLCL NEEDRSLSAI EMMLPLLQRG
401: IAVHHSGLLP VLKELVELLF QEGLVKALFA TETFAMGLNM PAKTVVFTAV KKWDGDSHRF IGSGEYIQMS GRAGRRGKDE RGICIIMIDE QMEMDVLKDM
501: MLGKPAPLLS TFRLSYYTIL NLLSRAEGQF TAEHVIKHSF HQFQYEKALP DIENKVTKLE EEAAILDASG KAEVAEYHKL KLDIAPLEKK LMSEIIRPER
601: VLCFLDTGRL VKIREGGTDW GWGVVVNVVK KTSVGTSSQG GGYIVDTLLH CSTGVSENGA KPKPCPPRPG EKGEMHVVPV QLPLITALSR LRISVPSDLR
701: PLEARQSILL AVQELSSRFP LGFPKLHPVK DMNIQDTEIV GLVSQIEEAE QKLLAHPMHK SEDDQQMKSF QRKAEVNYEI QQFKSKMRDS QLQKFRDELR
801: NRSRVLKKLG HIDADGVVQL KGRAACLIDT GDELLVTELM FNGTFNDLDH HQVAALASCF IPVDKSNEKV ELRNELNRPL QQLKDNARKI AEIQHECKLE
901: IDVEEYVEST IREGLMDVIY CWSTGSTFAE VMNKTDIFEG SIIRSARRLD EFLNQLRLAA EAVGENNLAS KFAAASESLR RGIMFANSLY L

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.