Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G091400.1 | Wheat | cytosol | 98.61 | 97.83 |
| HORVU4Hr1G018990.9 | Barley | plastid | 96.91 | 93.83 |
| TraesCS2A01G154400.1 | Wheat | cytosol | 94.42 | 93.58 |
| Os11t0176200-01 | Rice | nucleus | 90.64 | 90.73 |
| TraesCS4B01G094600.1 | Wheat | nucleus | 98.61 | 90.33 |
| EES02351 | Sorghum | nucleus | 88.45 | 88.45 |
| Zm00001d008777_P008 | Maize | nucleus | 88.15 | 87.97 |
| VIT_11s0065g00340.t01 | Wine grape | cytosol | 79.18 | 79.9 |
| Solyc05g047520.2.1 | Tomato | nucleus | 73.01 | 78.31 |
| KRH41401 | Soybean | nucleus | 75.4 | 77.56 |
| PGSC0003DMT400035614 | Potato | cytosol | 76.59 | 77.21 |
| KRH60115 | Soybean | cytosol | 74.1 | 76.94 |
| Bra029783.1-P | Field mustard | cytosol | 74.5 | 76.02 |
| CDY44724 | Canola | cytosol | 74.6 | 75.81 |
| CDY41593 | Canola | cytosol | 74.7 | 75.68 |
| AT2G06990.1 | Thale cress | nucleus | 75.0 | 75.68 |
| Solyc12g017860.1.1 | Tomato | nucleus | 70.82 | 75.64 |
| PGSC0003DMT400052548 | Potato | cytosol | 73.21 | 75.08 |
| GSMUA_Achr3P05450_001 | Banana | nucleus | 79.58 | 73.98 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 48.31 | 48.74 |
| TraesCS7A01G010800.1 | Wheat | cytosol | 47.81 | 45.07 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 34.26 | 25.16 |
| TraesCS6A01G312100.1 | Wheat | plastid | 23.71 | 19.77 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 13.94 | 10.93 |
| TraesCS6A01G024900.1 | Wheat | nucleus | 17.73 | 8.17 |
| TraesCS7A01G238700.1 | Wheat | cytosol | 17.13 | 8.14 |
| TraesCS4A01G057200.1 | Wheat | mitochondrion, peroxisome | 15.94 | 7.7 |
| TraesCS1A01G323500.1 | Wheat | plastid | 15.14 | 7.37 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:EF_Hand_1_Ca_BS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 | ScanProsite:PS00018 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR12131 | PANTHER:PTHR12131:SF6 | SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 |
| InterPro:Ski2-like | InterPro:Ski2_C | EnsemblPlantsGene:TraesCS4A01G216300 | EnsemblPlants:TraesCS4A01G216300.1 | TIGR:cd00046 | TIGR:cd00079 |
| TIGR:cd13154 | InterPro:rRNA_proc-arch_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:-:515000857..515007042
Molecular Weight (calculated)
112666.0 Da
IEP (calculated)
6.422
GRAVY (calculated)
-0.272
Length
1004 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEVENTSKR KAPELDSEDS SAAAVMNGQQ SLPGSAAKRQ NLARSCIHEV AAPNGYDLSK DEAVHGTLSN PVFNGNMAKT YPFQLDPFQT VSVACLERNE
0101: SVLVSAHTSA GKTAIAEYAI AMSFRDKQRV IYTSPLKALS NQKYRELSQE FSDVGLMTGD VTLQPNATCL VMTTEILRAM LYRGSEVIKE VGWVIFDEIH
0201: YMKDRERGVV WEESIVFLPP AIKMVFLSAT MSNATEFAEW ICNLHKQPCH VVYTDFRPTP LQHYVFPIGG SGLYLVVDEN GQFREDNFLK LQDTFAKQPS
0301: QLDGKKNGGP KASGRIAKGG NASGTSDIYR IVKMIMERKF QPVIIFSFSR RECEHHAMSM SKLDFNTEEE KDSIEQVFRS AIFCLSEEDR GLPAIELMLP
0401: LLKRGIAVHH SGLLPIIKEL VELLFQEGLV KALFATETFA MGLNMPAKTV VFTSVKKWDG DSNRFIGSGE YIQMSGRAGR RGKDERGICV IMIDEKMEMS
0501: VIKDMVLGKP APLISTFRLS YYTILNLLSR AEGQFTAEHV IRNSFHQFQY EKALPEVVQK ITRLENEASL LGSSGENDLA EYHKLGLDIS ELEKKIMSEM
0601: IRPERALLYL VPGRLVKVRD GSTDWGWGVV VNVVKKPSTS SSLPPALSAS RNNNYIVDTL LHCSSSSSES GLHSKPCPPR PGEKGEMHVV PVPLPLVCGL
0701: SSIRISIPSD LRPPEARQNI LFAVQELGKR YPQGLPKLHP ITDMGIEEPE LVDLVHKLED LEQKLCSHPL HKSDQSEQQL SWYQRKAELN HEIQQLKSKM
0801: RDSQLQKFRD ELKNRSRVLK MLGHIDADGV LQLKGRAACL IDTGDELLIT ELMFNGTFND LDHHQVASVV SCFVPCEKSS EQIRLRNELS KPMMQLQEAA
0901: RKIAEVQREC KLDINVEEYV ESTCKPYLMD VIYCWSKGAT FGEVTEMTDI FEGSIIRLVR RLDEFLNQLK AAAEAVGEVN LENKFGSASE SLRRGIMFAN
1001: SLYL
0101: SVLVSAHTSA GKTAIAEYAI AMSFRDKQRV IYTSPLKALS NQKYRELSQE FSDVGLMTGD VTLQPNATCL VMTTEILRAM LYRGSEVIKE VGWVIFDEIH
0201: YMKDRERGVV WEESIVFLPP AIKMVFLSAT MSNATEFAEW ICNLHKQPCH VVYTDFRPTP LQHYVFPIGG SGLYLVVDEN GQFREDNFLK LQDTFAKQPS
0301: QLDGKKNGGP KASGRIAKGG NASGTSDIYR IVKMIMERKF QPVIIFSFSR RECEHHAMSM SKLDFNTEEE KDSIEQVFRS AIFCLSEEDR GLPAIELMLP
0401: LLKRGIAVHH SGLLPIIKEL VELLFQEGLV KALFATETFA MGLNMPAKTV VFTSVKKWDG DSNRFIGSGE YIQMSGRAGR RGKDERGICV IMIDEKMEMS
0501: VIKDMVLGKP APLISTFRLS YYTILNLLSR AEGQFTAEHV IRNSFHQFQY EKALPEVVQK ITRLENEASL LGSSGENDLA EYHKLGLDIS ELEKKIMSEM
0601: IRPERALLYL VPGRLVKVRD GSTDWGWGVV VNVVKKPSTS SSLPPALSAS RNNNYIVDTL LHCSSSSSES GLHSKPCPPR PGEKGEMHVV PVPLPLVCGL
0701: SSIRISIPSD LRPPEARQNI LFAVQELGKR YPQGLPKLHP ITDMGIEEPE LVDLVHKLED LEQKLCSHPL HKSDQSEQQL SWYQRKAELN HEIQQLKSKM
0801: RDSQLQKFRD ELKNRSRVLK MLGHIDADGV LQLKGRAACL IDTGDELLIT ELMFNGTFND LDHHQVASVV SCFVPCEKSS EQIRLRNELS KPMMQLQEAA
0901: RKIAEVQREC KLDINVEEYV ESTCKPYLMD VIYCWSKGAT FGEVTEMTDI FEGSIIRLVR RLDEFLNQLK AAAEAVGEVN LENKFGSASE SLRRGIMFAN
1001: SLYL
001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
Arabidopsis Description
HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.