Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G291500.1 | Wheat | plastid | 96.26 | 98.39 |
| TraesCS6B01G342300.1 | Wheat | plastid | 98.01 | 98.17 |
| HORVU6Hr1G076860.2 | Barley | plastid | 95.27 | 95.9 |
| Os02t0739000-01 | Rice | plastid, vacuole | 87.38 | 89.23 |
| Zm00001d017982_P001 | Maize | plastid | 83.55 | 85.62 |
| OQU85441 | Sorghum | plastid | 82.31 | 83.28 |
| VIT_01s0026g01000.t01 | Wine grape | cytosol | 61.96 | 70.11 |
| GSMUA_Achr8P22600_001 | Banana | plastid | 66.2 | 66.09 |
| Solyc05g006530.2.1 | Tomato | nucleus | 62.54 | 65.25 |
| PGSC0003DMT400058295 | Potato | plastid | 62.38 | 64.97 |
| KRH74713 | Soybean | nucleus | 61.54 | 63.77 |
| CDY38782 | Canola | plastid | 60.71 | 62.75 |
| Bra016240.1-P | Field mustard | plastid | 60.47 | 62.44 |
| CDY11624 | Canola | plastid | 59.47 | 62.15 |
| AT1G70070.1 | Thale cress | plastid | 59.55 | 61.23 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 19.6 | 23.72 |
| TraesCS4A01G216300.1 | Wheat | cytosol | 19.77 | 23.71 |
| TraesCS2A01G154400.1 | Wheat | cytosol | 19.77 | 23.49 |
| TraesCS7A01G010800.1 | Wheat | cytosol | 19.68 | 22.25 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 20.6 | 18.14 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 11.38 | 10.69 |
| TraesCS4A01G057200.1 | Wheat | mitochondrion, peroxisome | 14.53 | 8.42 |
| TraesCS1A01G323500.1 | Wheat | plastid | 13.79 | 8.05 |
| TraesCS6A01G024900.1 | Wheat | nucleus | 13.54 | 7.48 |
| TraesCS7A01G238700.1 | Wheat | cytosol | 12.96 | 7.39 |
Protein Annotations
| Gene3D:1.10.3380.30 | MapMan:16.12.2.1.1.3 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000003 |
| GO:GO:0000166 | GO:GO:0000373 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0006810 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 |
| GO:GO:0010494 | GO:GO:0010497 | GO:GO:0016441 | GO:GO:0040029 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF360 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01142 | SUPFAM:SSF52540 | SignalP:SignalP-noTM | InterPro:Ski2_C | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6A01G312100 |
| EnsemblPlants:TraesCS6A01G312100.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6A:-:548405387..548416711
Molecular Weight (calculated)
135879.0 Da
IEP (calculated)
5.653
GRAVY (calculated)
-0.348
Length
1204 amino acids
Sequence
(BLAST)
(BLAST)
0001: MHCLAPHFLL LLPLPTAPRH APPQTPPPAL LLPCRPAQAQ AHAAPLHRPS ARSRSRAAAP VSDEDDDEEA DEEEEDDDGL DIRDADYDED DDGEGDEELE
0101: EESGGEDEEE GVAAAEDSRQ ETAERRQRSE QYKSQQVAKL VAEVREFGDD IIDYNELAGI YDFPIDKFQR LAIQAFLRGS SVVVSAPTSS GKTLIAEAAA
0201: VATVARGRRL FYTTPLKALS NQKFREFRNT FGDHNVGLLT GDSAINKDAQ ILIMTTEILR NMLYQSVGMS ASDGRLFEVD VIVLDEVHYL SDISRGTVWE
0301: ETVIYCPKEV QLICLSATVA NPDELAGWIG QIHGKTELVT SSKRPVPLTW HFSKKFALLP LLDGKGKKMN RKLRMSHVQN ISSPKSEFYY VKGKRKVRTN
0401: KNEQGNRSPL DISKQVQLSK HEVTNMRRSQ VPLIRETLSQ LWENDMLPAI WFIFSRRGCD AAVEYIEDCR LLHDCEASEV ELELRRFRMQ YPDAVRENAV
0501: KGLLRGVAAH HAGCLPLWKS FIEELFQRGL VKVVFATETL AAGINMPART AVISSLSKRI DAGRQLLTPN NLFQMAGRAG RRGIDTVGHS VLVQTTNEGP
0601: EECCDVIFAG LEPLVSQFTA SYGMVLNLLA GSKVTHKQKE SGDVKAKRSG RTLEEARKLV EQSFGNYVGS NVMVAAKEEL ERIQKEIQHL SSEITDEFID
0701: RKCRKELSEE DYAEISLLQN KLKEEKKIRN ELKKRMELER MAAWKTQLEE FESGYLPFMC LQYKDKDSVH HTIPAVFIGS LSSFDDQKIA SMLEDDSIGP
0801: GKQEFDSEGQ LLCPSYYVAL SSDNSWYLFT EKWIKTVYQT GLPAVPSVEG GPLPRETLKQ LLLREDMIWD KIAKSEHGFL LCMDGSLDTW SWSLNVPVLN
0901: SLSEDDKVER FSQEHQAAVE SHKQQRRKVS QLKKTIRSTK GFREFQKIID MRNFTKEKIE RLEARSRRLT RRIMQIEPTG WKEFLQISKV IQEARVLDIN
1001: TQVIYPLGET AAAIRGENEL WLAMVLRNKV LLDLKPSQLA AVCGSLVSEG IKLRPWKNSS FVYEPSSVVV GVINYLGEQR NSLLDLQEKH GVKVWHMMFL
1101: FSCVFKSIVA LVTFLIHLLL GVQIPCEIDT QFAGMVEAWA SGLTWREIMM DSAMDDGDLA RLLRRTMDLL AQIPKLPDID PVLQKNAQIA CSVMDRVPLS
1201: ELAG
0101: EESGGEDEEE GVAAAEDSRQ ETAERRQRSE QYKSQQVAKL VAEVREFGDD IIDYNELAGI YDFPIDKFQR LAIQAFLRGS SVVVSAPTSS GKTLIAEAAA
0201: VATVARGRRL FYTTPLKALS NQKFREFRNT FGDHNVGLLT GDSAINKDAQ ILIMTTEILR NMLYQSVGMS ASDGRLFEVD VIVLDEVHYL SDISRGTVWE
0301: ETVIYCPKEV QLICLSATVA NPDELAGWIG QIHGKTELVT SSKRPVPLTW HFSKKFALLP LLDGKGKKMN RKLRMSHVQN ISSPKSEFYY VKGKRKVRTN
0401: KNEQGNRSPL DISKQVQLSK HEVTNMRRSQ VPLIRETLSQ LWENDMLPAI WFIFSRRGCD AAVEYIEDCR LLHDCEASEV ELELRRFRMQ YPDAVRENAV
0501: KGLLRGVAAH HAGCLPLWKS FIEELFQRGL VKVVFATETL AAGINMPART AVISSLSKRI DAGRQLLTPN NLFQMAGRAG RRGIDTVGHS VLVQTTNEGP
0601: EECCDVIFAG LEPLVSQFTA SYGMVLNLLA GSKVTHKQKE SGDVKAKRSG RTLEEARKLV EQSFGNYVGS NVMVAAKEEL ERIQKEIQHL SSEITDEFID
0701: RKCRKELSEE DYAEISLLQN KLKEEKKIRN ELKKRMELER MAAWKTQLEE FESGYLPFMC LQYKDKDSVH HTIPAVFIGS LSSFDDQKIA SMLEDDSIGP
0801: GKQEFDSEGQ LLCPSYYVAL SSDNSWYLFT EKWIKTVYQT GLPAVPSVEG GPLPRETLKQ LLLREDMIWD KIAKSEHGFL LCMDGSLDTW SWSLNVPVLN
0901: SLSEDDKVER FSQEHQAAVE SHKQQRRKVS QLKKTIRSTK GFREFQKIID MRNFTKEKIE RLEARSRRLT RRIMQIEPTG WKEFLQISKV IQEARVLDIN
1001: TQVIYPLGET AAAIRGENEL WLAMVLRNKV LLDLKPSQLA AVCGSLVSEG IKLRPWKNSS FVYEPSSVVV GVINYLGEQR NSLLDLQEKH GVKVWHMMFL
1101: FSCVFKSIVA LVTFLIHLLL GVQIPCEIDT QFAGMVEAWA SGLTWREIMM DSAMDDGDLA RLLRRTMDLL AQIPKLPDID PVLQKNAQIA CSVMDRVPLS
1201: ELAG
0001: MNTLPVVSLT ASSSFKFFHF PSLHRSLSHS PNFSFTKSLI LNPNHLSFKS TLNSLSPSQS QLYEEEDDEE EEEEDEDDDD EAADEYDNIS DEIRNSDDDD
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
Arabidopsis Description
ISE2DExH-box ATP-dependent RNA helicase DExH15 chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.