Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G312100.1 | Wheat | plastid | 98.39 | 96.26 |
| HORVU6Hr1G076860.2 | Barley | plastid | 97.54 | 96.07 |
| TraesCS6B01G342300.1 | Wheat | plastid | 97.71 | 95.76 |
| Os02t0739000-01 | Rice | plastid, vacuole | 89.47 | 89.4 |
| Zm00001d017982_P001 | Maize | plastid | 85.23 | 85.45 |
| OQU85441 | Sorghum | plastid | 83.96 | 83.11 |
| VIT_01s0026g01000.t01 | Wine grape | cytosol | 63.33 | 70.11 |
| GSMUA_Achr8P22600_001 | Banana | plastid | 67.74 | 66.17 |
| Solyc05g006530.2.1 | Tomato | nucleus | 64.01 | 65.34 |
| PGSC0003DMT400058295 | Potato | plastid | 63.84 | 65.05 |
| KRH74713 | Soybean | nucleus | 62.99 | 63.86 |
| CDY38782 | Canola | plastid | 62.14 | 62.83 |
| Bra016240.1-P | Field mustard | plastid | 61.88 | 62.52 |
| CDY11624 | Canola | plastid | 60.87 | 62.24 |
| AT1G70070.1 | Thale cress | plastid | 60.87 | 61.23 |
| TraesCS7D01G010500.1 | Wheat | cytosol | 20.12 | 23.99 |
| TraesCS2D01G159900.1 | Wheat | cytosol | 20.2 | 23.66 |
| TraesCS4D01G091400.1 | Wheat | cytosol | 20.2 | 23.52 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 11.29 | 10.82 |
| TraesCS7D01G199800.1 | Wheat | cytosol | 10.95 | 8.35 |
| TraesCS4D01G247100.1 | Wheat | mitochondrion, peroxisome | 14.69 | 8.33 |
| TraesCS1D01G324400.1 | Wheat | plastid | 14.26 | 8.14 |
| TraesCS6D01G028200.1 | Wheat | cytosol | 13.92 | 7.52 |
Protein Annotations
| Gene3D:1.10.3380.30 | MapMan:16.12.2.1.1.3 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000003 |
| GO:GO:0000166 | GO:GO:0000373 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0006810 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 |
| GO:GO:0010494 | GO:GO:0010497 | GO:GO:0016441 | GO:GO:0040029 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF360 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01142 | SUPFAM:SSF52540 | SignalP:SignalP-noTM | InterPro:Ski2_C | EnsemblPlantsGene:TraesCS6D01G291500 | EnsemblPlants:TraesCS6D01G291500.1 |
| TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6D:-:402120656..402132910
Molecular Weight (calculated)
132874.0 Da
IEP (calculated)
5.517
GRAVY (calculated)
-0.411
Length
1178 amino acids
Sequence
(BLAST)
(BLAST)
0001: MHCLAPHFLL LLPLPTAPRH APPQTPPPAL LLPCRPAQAH AHAHAHAAPL HRPSARSPSR AAAPVSDEDD DEEADEEEED DDELDIRDAD YDEDDDAEGD
0101: EELEEESGGE DEEAGDVAAE DSRQETAERR QRSEQYKSQQ VAKLVAEVRE FGDDIIDYNE LAGIYDFPID KFQRLAIQAF LRGSSVVVSA PTSSGKTLIA
0201: EAAAVATVAR GRRLFYTTPL KALSNQKFRE FRNTFGDHNV GLLTGDSAIN KDAQILIMTT EILRNMLYQS VGMSASDGRL FEVDVIVLDE VHYLSDISRG
0301: TVWEETVIYC PKEVQLICLS ATVANPDELA GWIGQIHGKT ELVTSSKRPV PLTWHFSKKF ALLPLLDGKG KKMNRKLRMS HVQNISSPKS EFYYVKGKRK
0401: VRTNKNEQGN RSPLDISKQV QLSKHEVTNM RRSQVPLIRE TLSQLWENDM LPAIWFIFSR RGCDAAVEYI EDCRLLHDCE ASEVELELRR FRMQYPDAVR
0501: ENAVKGLLRG VAAHHAGCLP LWKSFIEELF QRGLVKVVFA TETLAAGINM PARTAVISSL SKRIDAGRQL LTPNNLFQMA GRAGRRGIDT VGHSVLVQTT
0601: NEGPEECCDV IFAGLEPLVS QFTASYGMVL NLLAGSKVTH KQKESGDVKA KRSGRTLEEA RKLVEQSFGN YVGSNVMVAA KEELERIQKD IQHLSSEITD
0701: EFIDRKCRKE LSEEDYAEIS LLQNKLKEEK KIRNELKKRM ELERMAAWKT QLEEFESGHL PFMCLQYKDK DSVHHTIPAV FIGSLSSFDD QKIASMLEDD
0801: SIGPGKQEVD SEGQHFCPSY YVALSSDNSW YLFTEKWIKT VYQTGLPAVP SVEGGPLPRE TLKQLLLRED MIWDKIAKSE HGFLLCMDGS LDTWSWSLNV
0901: PVLNSLSEDD KVERFSQEHQ AAVESHKQQR RKVSQLKKTI RSTKGFREFQ KIIDMRNFTK EKIERLEARS RRLTRRIMQI EPTGWKEFLQ ISNVIQEARV
1001: LDINTQVIYP LGETAAAIRG ENELWLAMVL RNKVLLDLKP SQLAAVCGSL VSEGIKLRPW KNSSFVYEPS SVVVGVINYL EEQRNSLLDL QEKHGVKITC
1101: EIDTQFAGMV EAWASGLTWR EIMMDSAMDD GDLARLLRRT MDLLAQIPKL PDIDPVLQKN AQIACSVMDR VPLSELAG
0101: EELEEESGGE DEEAGDVAAE DSRQETAERR QRSEQYKSQQ VAKLVAEVRE FGDDIIDYNE LAGIYDFPID KFQRLAIQAF LRGSSVVVSA PTSSGKTLIA
0201: EAAAVATVAR GRRLFYTTPL KALSNQKFRE FRNTFGDHNV GLLTGDSAIN KDAQILIMTT EILRNMLYQS VGMSASDGRL FEVDVIVLDE VHYLSDISRG
0301: TVWEETVIYC PKEVQLICLS ATVANPDELA GWIGQIHGKT ELVTSSKRPV PLTWHFSKKF ALLPLLDGKG KKMNRKLRMS HVQNISSPKS EFYYVKGKRK
0401: VRTNKNEQGN RSPLDISKQV QLSKHEVTNM RRSQVPLIRE TLSQLWENDM LPAIWFIFSR RGCDAAVEYI EDCRLLHDCE ASEVELELRR FRMQYPDAVR
0501: ENAVKGLLRG VAAHHAGCLP LWKSFIEELF QRGLVKVVFA TETLAAGINM PARTAVISSL SKRIDAGRQL LTPNNLFQMA GRAGRRGIDT VGHSVLVQTT
0601: NEGPEECCDV IFAGLEPLVS QFTASYGMVL NLLAGSKVTH KQKESGDVKA KRSGRTLEEA RKLVEQSFGN YVGSNVMVAA KEELERIQKD IQHLSSEITD
0701: EFIDRKCRKE LSEEDYAEIS LLQNKLKEEK KIRNELKKRM ELERMAAWKT QLEEFESGHL PFMCLQYKDK DSVHHTIPAV FIGSLSSFDD QKIASMLEDD
0801: SIGPGKQEVD SEGQHFCPSY YVALSSDNSW YLFTEKWIKT VYQTGLPAVP SVEGGPLPRE TLKQLLLRED MIWDKIAKSE HGFLLCMDGS LDTWSWSLNV
0901: PVLNSLSEDD KVERFSQEHQ AAVESHKQQR RKVSQLKKTI RSTKGFREFQ KIIDMRNFTK EKIERLEARS RRLTRRIMQI EPTGWKEFLQ ISNVIQEARV
1001: LDINTQVIYP LGETAAAIRG ENELWLAMVL RNKVLLDLKP SQLAAVCGSL VSEGIKLRPW KNSSFVYEPS SVVVGVINYL EEQRNSLLDL QEKHGVKITC
1101: EIDTQFAGMV EAWASGLTWR EIMMDSAMDD GDLARLLRRT MDLLAQIPKL PDIDPVLQKN AQIACSVMDR VPLSELAG
0001: MNTLPVVSLT ASSSFKFFHF PSLHRSLSHS PNFSFTKSLI LNPNHLSFKS TLNSLSPSQS QLYEEEDDEE EEEEDEDDDD EAADEYDNIS DEIRNSDDDD
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
Arabidopsis Description
ISE2DExH-box ATP-dependent RNA helicase DExH15 chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.