Factsheet for Bra016240.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38782	Canola	plastid	97.86	97.94
CDY11624	Canola	plastid	95.88	97.05
AT1G70070.1	Thale cress	plastid	91.51	91.12
VIT_01s0026g01000.t01	Wine grape	cytosol	68.01	74.53
PGSC0003DMT400058295	Potato	plastid	69.04	69.64
Solyc05g006530.2.1	Tomato	nucleus	68.18	68.89
KRH74713	Soybean	nucleus	68.01	68.24
TraesCS6D01G291500.1	Wheat	plastid	62.52	61.88
Os02t0739000-01	Rice	plastid, vacuole	62.52	61.83
Zm00001d017982_P001	Maize	plastid	61.84	61.36
GSMUA_Achr8P22600_001	Banana	plastid	62.95	60.86
HORVU6Hr1G076860.2	Barley	plastid	62.18	60.62
TraesCS6B01G342300.1	Wheat	plastid	62.44	60.57
TraesCS6A01G312100.1	Wheat	plastid	62.44	60.47
OQU85441	Sorghum	plastid	61.15	59.92
Bra035425.1-P	Field mustard	nucleus	9.09	28.04
Bra027835.1-P	Field mustard	nucleus	19.81	24.16
Bra029783.1-P	Field mustard	cytosol	19.81	23.48
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	11.32	21.29
Bra018181.1-P	Field mustard	nucleus	20.58	17.9
Bra008413.1-P	Field mustard	cytosol	10.21	12.71
Bra033025.1-P	Field mustard	nucleus	11.15	11.88
Bra012260.1-P	Field mustard	cytosol	14.58	7.78
Bra040938.1-P	Field mustard	nucleus	14.15	7.76
Bra022718.1-P	Field mustard	cytosol	14.49	7.72
Bra020835.1-P	Field mustard	cytosol	13.81	7.71
Bra029333.1-P	Field mustard	plastid	13.38	7.31
Bra011372.1-P	Field mustard	nucleus	14.15	7.18

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.12.2.1.1.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra016240	EnsemblPlants:Bra016240.1
EnsemblPlants:Bra016240.1-P	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000003	GO:GO:0000166	GO:GO:0000373
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006810
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010494	GO:GO:0010497
GO:GO:0016441	GO:GO:0040029	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:M4DIB3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF360	SMART:SM00487	SMART:SM00490	SMART:SM01142
SUPFAM:SSF52540	InterPro:Ski2_C	UniParc:UPI0002541922	SEG:seg	:	:

Description

AT1G70070 (E=0.0) EMB25, PDE317, ISE2 | EMB25 (EMBRYO DEFECTIVE 25); ATP-dependent helicase/ RNA helicase

Coordinates

chrA07:-:18685496..18689691

Molecular Weight (calculated)

131864.0 Da

IEP (calculated)

5.182

GRAVY (calculated)

-0.369

Length

1166 amino acids

Sequence
(BLAST)

0001: MNTLPVVSLT PSSSFRFFHF PSPLSHSPTF SFRKSIILTP TPRSRLLSFK SLNSLSPSQS QLSEEYDEDD DDDEEEEDED DDEAADEYDD ITDETRNTDD
0101: DEPEFPVDSP PESSRQRVEF RWQRVEKLRS LVRDFGVEMI DIDELVSIYD FRIDKFQRLA IEAFLRGSSV VVSAPTSSGK TLIAEAAAVA TVARGRRLFY
0201: TTPLKALSNQ KFREFRETFG DDNVGLLTGD SAINKDAQIV IMTTEILRNM LYQSVGMASS GTGLFHVDAI VLDEVHYLSD ISRGTVWEEI VIYCPKEVQL
0301: ICLSATVANP DELAGWIGEI HGKTELVTST RRPVPLTWYF STKHSLLPLL DEKGIHVNRK LSLNYLQMSA SEARYRDDDD GRRGRRSRKH RGDTSYNSLV
0401: NISDYPLTKN EINKIRRSQV PQISDTLWHL QGKHMLPAIW FIFNRRGCDA AVQYVENFQL LDDCEKGEVE LALRKFRVLY PDAVRESAEK GLLRGIAAHH
0501: AGCLPLWKSF IEELFQRGLV KVVFATETLA AGINMPARTA VISSLTKKAG NERIQLGPNE LFQMAGRAGR RGIDDKGYTV LVQTAFEGAE ECCKLVFAGV
0601: KPLVSQFTAS YGMVLNLVAG SKVTRKSNGT EDGKVLQAGR SLEEAKKLVE KSFGNYVSSN VMVAAKEELA EIDKKIEILT SEISDEAIDK KSRKLLSANQ
0701: YKEITALQGE LREEKRKRTE FRKKMELERF SALKPLLKGM EDGNLPFICL EFKDSEGMQQ SVPAVYLGHI DSFNGSKLQK MMSLDESFAL NVIEDEPAAD
0801: EPIVKPSYYV ALGSDNSWYL FTEKWIRTVY RTGFPNTALA IGDALPREIM KALLDKADMQ WDKLSESELG SMWRMEGSLE TWSWSLNVPV LSSLSEEDEV
0901: LHMSQEYDNA AEQYKEQRSK VSRLKKRISR SAGFREYKKI LENAKLTVEK MKRLKARSRR LINRLEQIEP SGWKDFMRIS NVIHESRALD INTHLIFPLG
1001: ETAAAIRGEN ELWLAMVLRN KVLVDLKPPQ LAGVCASLVS EGIKVRPWRD NNYIYEPSET VVDVVNFLEE QRSSLIKLQE KHEVEISCCL DVQFSGMVEA
1101: WASGLSWKEM MMECAMDEGD LARLLRRTID LLAQIPKLPD IDPTLQRSAA AAADIMDRPP ISELAG

Best Arabidopsis Sequence Match ( AT1G70070.1 )
(BLAST)

0001: MNTLPVVSLT ASSSFKFFHF PSLHRSLSHS PNFSFTKSLI LNPNHLSFKS TLNSLSPSQS QLYEEEDDEE EEEEDEDDDD EAADEYDNIS DEIRNSDDDD
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G

Arabidopsis Description

ISE2DExH-box ATP-dependent RNA helicase DExH15 chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.