Factsheet for Bra035425.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G048420.1	Barley	cytosol	11.64	53.66
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	37.04	47.95
CDY65064	Canola	nucleus	96.56	36.83
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	91.8	35.12
Bra027835.1-P	Field mustard	nucleus	87.83	34.73
VIT_06s0009g01750.t01	Wine grape	cytosol	79.37	30.09
Solyc01g103080.2.1	Tomato	nucleus	78.31	29.87
PGSC0003DMT400053368	Potato	nucleus	78.04	29.74
TraesCS7D01G010500.1	Wheat	cytosol	76.98	29.45
TraesCS4A01G484300.2	Wheat	cytosol	76.98	29.25
EER87693	Sorghum	cytosol	77.25	29.17
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	76.45	28.9
KRH46878	Soybean	nucleus	74.6	28.75
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	76.19	28.46
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	76.72	27.86
TraesCS7A01G010800.1	Wheat	cytosol	76.72	27.23
Bra029783.1-P	Field mustard	cytosol	54.23	20.83
Os12t0279000-01	Rice	mitochondrion	33.07	16.11
Bra018181.1-P	Field mustard	nucleus	39.95	11.26
Bra016240.1-P	Field mustard	plastid	28.04	9.09
Bra008413.1-P	Field mustard	cytosol	20.37	8.23
Bra033025.1-P	Field mustard	nucleus	17.2	5.94
Bra020835.1-P	Field mustard	cytosol	19.84	3.59
Bra012260.1-P	Field mustard	cytosol	20.11	3.48
Bra022718.1-P	Field mustard	cytosol	20.11	3.47
Bra029333.1-P	Field mustard	plastid	16.93	3.0
Bra040938.1-P	Field mustard	nucleus	16.67	2.96
Bra011372.1-P	Field mustard	nucleus	16.93	2.78
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	2.12	1.29

Protein Annotations

EnsemblPlants:Bra035425.1	EnsemblPlants:Bra035425.1-P	EnsemblPlantsGene:Bra035425	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:P-loop_NTPase	PANTHER:PTHR12131	PANTHER:PTHR12131:SF7	PFAM:PF00270	PFscan:PS51192	SMART:SM00487
SUPFAM:SSF52540	UniParc:UPI00025448E4	UniProt:M4F2X5	MapMan:16.8.1.2.3.1	:	:

Description

AT1G59760 (E=1e-203) | ATP-dependent RNA helicase, putative

Coordinates

chrA01:-:16392889..16394637

Molecular Weight (calculated)

42498.5 Da

IEP (calculated)

4.933

GRAVY (calculated)

-0.391

Length

378 amino acids

Sequence
(BLAST)

001: MGSVKRKSLE ESTDCAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP TPAQADNKPP AKEFPFTLDS FQSEAIKCLD NAESVMVSAH TSAGKTVVAS
101: YAIAMSLREN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHKQ PCHIVYTDYR PTPLQHYVFP AGGSGLYLVV DEKAKFHEDS FQKSLNALVP ANDGDKKREN GKSQKGLILG
301: KIGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMDLNSDDE KDSVETIFTS AIDMLSDDDK KLPQASIH

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.