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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76356 Canola nucleus 18.5 97.47
CDX76355 Canola cytosol 55.97 90.05
Bra012260.1-P Field mustard cytosol 92.81 88.61
Bra022718.1-P Field mustard cytosol 92.19 87.93
Bra008413.1-P Field mustard cytosol 35.12 78.31
VIT_05s0102g00480.t01 Wine grape cytosol 75.85 76.58
Solyc06g082100.2.1 Tomato nucleus 71.11 75.48
PGSC0003DMT400078069 Potato cytosol 78.44 75.3
KRH13647 Soybean cytosol 78.25 74.81
KRH43818 Soybean nucleus 78.15 74.71
Solyc06g071620.2.1 Tomato nucleus 69.33 71.85
GSMUA_Achr3P29700_001 Banana cytosol 63.1 71.58
EER99779 Sorghum cytosol 72.64 69.48
Zm00001d022286_P003 Maize plastid 72.64 69.41
TraesCS6A01G024900.1 Wheat nucleus 71.59 68.59
TraesCS6B01G034100.1 Wheat cytosol 71.54 68.52
TraesCS6D01G028200.1 Wheat cytosol 71.54 68.45
HORVU6Hr1G004350.3 Barley cytosol, mitochondrion, nucleus 71.54 68.17
EES04337 Sorghum cytosol 70.44 67.65
TraesCS7D01G199800.1 Wheat cytosol 49.21 66.47
HORVU7Hr1G040480.2 Barley cytosol, mitochondrion 67.47 65.49
TraesCS7B01G103700.1 Wheat cytosol 67.47 64.94
TraesCS7A01G238700.1 Wheat cytosol 65.26 64.49
Os03t0743800-00 Rice nucleus 65.93 64.18
KXG37223 Sorghum cytosol 67.37 63.79
Solyc06g065300.2.1 Tomato cytosol 18.93 59.94
Bra029333.1-P Field mustard plastid 38.86 38.02
Bra033025.1-P Field mustard nucleus 11.45 21.85
Bra035425.1-P Field mustard nucleus 3.59 19.84
Bra027835.1-P Field mustard nucleus 8.62 18.83
Bra029783.1-P Field mustard cytosol 8.43 17.89
Bra035426.1-P Field mustard cytosol, golgi, plastid 4.98 16.77
Bra018181.1-P Field mustard nucleus 9.87 15.36
Bra040938.1-P Field mustard nucleus 14.18 13.92
Bra016240.1-P Field mustard plastid 7.71 13.81
Bra011372.1-P Field mustard nucleus 13.61 12.35
Protein Annotations
Gene3D:1.10.10.2530Gene3D:1.10.150.20Gene3D:1.10.3380.10MapMan:16.4.7.1.4Gene3D:2.60.40.150Gene3D:3.40.50.300
InterPro:AAA+_ATPaseEnsemblPlantsGene:Bra020835EnsemblPlants:Bra020835.1EnsemblPlants:Bra020835.1-PInterPro:C2_domain_sfncoils:Coil
InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005524
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR035892InterPro:Ig_E-set
UniProt:M4DWE1InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF02889PIRSF:PIRSF039073
PFscan:PS51192PFscan:PS51194PANTHER:PTHR24075PANTHER:PTHR24075:SF5SMART:SM00382SMART:SM00487
SMART:SM00490SMART:SM00973SUPFAM:SSF158702SUPFAM:SSF46785SUPFAM:SSF52540SUPFAM:SSF81296
InterPro:Sec63-domUniParc:UPI0002545E18InterPro:WH_DNA-bd_sfSEG:seg::
Description
AT1G20960 (E=0.0) emb1507 | emb1507 (embryo defective 1507); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding
Coordinates
chrA08:+:11791687..11799064
Molecular Weight (calculated)
237100.0 Da
IEP (calculated)
5.579
GRAVY (calculated)
-0.341
Length
2087 amino acids
Sequence
(BLAST)
0001: MDPKTFGDRV AKGRPQELED KLKKKKERDV VADDTVSARR SKRRRLREES VLTDTDDVVY QPKTKETRAA YEALLSVIQQ QLGGLPLSIA SGASDEILSL
0101: LKNDAVKNPE KKVEINKLLS TEDDQIDQVF DQLVSIGKLI TDFQEGGDSV GGHANEDEGL GNAFGVAVEF EGSEEDDDDG ELDMVEEEED EEDEEPQKTG
0201: GMQVDAGINE VDANEGTSLN VQDIGAYWLQ KKISQAYEQK MDSQKCHVLA EELLKILAEG DDRGVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA
0301: EDQEERNRIE EEMRGLGLEV AAIVEQLHAT RATAKEREEN LQKSINEEAR RLRDETVGDG GRGRRDVADR DLESGWLKGQ RQMLDLESLS FDQGGLLMAN
0401: KKCDLPPGSY RTHGKGYEEV HLPAVSKKVD VSEKLVKIAE MPDWAQPAFK GMQQLNSVQS KVYETALFKE DNILLCAPTG AGKTNVAMLT ILHQIELNRN
0501: DDGTFNHGNY KVVYVAPMKA LVAEVVSNLS NRLKDYGVTV RELSGDQSLS GKEIEETQII VTTPEKWDII TRKSGDRAYT QLVRLLIIDE IHLIHDNRGP
0601: VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF DKSYRPVPLR QQYIGISVRK PLQRFQLMND LCYQKVVAGT GMQQVLIFVH
0701: SRKETAKTAH AIVETAMAND KLSKFLKEDS ASREVLQSQI GLIKNGELRK LLPYGFAIHH AGLTRGDREI VEALFGGGHV QVLVSTATLA WGVNLPAHTV
0801: IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDRSGE GIIITGHSEL QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAKEA CHWLGYTYLY
0901: IRMVRNPTLY GLAPDALVKD VVLEERRADL IHSAATLLDK NNLVKYDRKS GYFQVTDLGR IASYYYISHV TIATYNEHLT PTMGDIDLYR LFSLSEEFKY
1001: VSVRQDEKME LAKLLDRVPV PIKETLEESS AKINVLLQAY ISQLKLEGLS LTSDMVYITQ SAGRLVRALY EILLKRGWAQ LAEKALNLSK MVGKRMWSVQ
1101: TPLRQFHGIP NEILMKLEKK DLVWERYYDL SSQELGELIR SPKMGRPLHK FIHQFPKLVL AAQVQPITRT VLRVELTITP DFQWDEKIHK YVEPFWITVE
1201: DNDCEKILHR ECFLLKKQYI SEDHTLTFTV PIFEPLPPQY FVRVVSDKWL GSQTVLPVSF RHLVLPEKHP PPTELLDLQP LPVTALRNPN YESLYQDFKH
1301: FNPVQTQVFT VLYKTYDNVL VAAPTGSGKT ICAEFAILKN HQEVLLRQED DATMRVVYIA PLEAIAKEQF RIWERKFGKG LGLRVVELTG ETALDLKLLE
1401: KSQIIISTPE KWDALSRRWK QRKYVQQVSL FIVDELHLIG EGQGGTVLEV IVSRMRYISS QGDNKIRIVA LSTSLANAKD LGEWIGASSH GLFNFSPGVR
1501: PVPLEIHIQG VDISSFEARM QAMTKPTYTA IVQHAKNKKP AIVFVPTRTH VRLTAVDLMA YSQMDNPQSP DFLLGKLEEL EPFVKKISEE TLKETLRHGV
1601: GYLHEALCTH LVVVMGTQYY DGRENSHADY AVSDLLQMMG RASRPLLDNA GKCVIFCHAP RKEYYKKFLY EAFPVESHLQ HFLDNNFNAE AVAGVIENKQ
1701: DAVDYLTWTF MYRRLPQNPN YYNLQGVSHR HLSDHLSELV ENTLSDLEAS KCIEIEDEMN LSALNLGMIA SYYYISYTPI ERFSSLLSSK TKMKGLLEIL
1801: TSASEYDMIP IRPGEEDRVR RLINHQRFSF ENPNCTDPHV KANALLQAHF SRQDIVTNLE IDQREVLLSA TRLLQAMVDV ISSNGWLNLA LLAMEASQMV
1901: TQGMWERDSM LLQLPHFTKE LAKRCQENNI ETVFDLVEME AEERLELLSI SDTELLDIAK FCNRFPNIDL TYEVVGSEDV TPGKEVTLQV TLERDMEGRT
2001: EVGAVDAPRY PKTKEEGWWL VVGDTKTNQL VAIKRVSLQK KAKVKLDFQV PSEAGEKPYT LYFMCDSYMG CDQEYAFSVD VKESMEE
Best Arabidopsis Sequence Match ( AT1G20960.1 )
(BLAST)
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
Arabidopsis Description
BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.