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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • plastid 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH13647 Soybean cytosol 98.31 98.31
VIT_05s0102g00480.t01 Wine grape cytosol 83.0 87.66
PGSC0003DMT400078069 Potato cytosol 83.78 84.13
Solyc06g082100.2.1 Tomato nucleus 75.4 83.72
GSMUA_Achr3P29700_001 Banana cytosol 69.03 81.9
AT1G20960.1 Thale cress cytosol 80.81 81.25
Bra012260.1-P Field mustard cytosol 79.94 79.83
Bra022718.1-P Field mustard cytosol 79.89 79.71
CDX76355 Canola cytosol 46.86 78.87
CDY31854 Canola cytosol 11.68 78.46
CDY48646 Canola cytosol 11.64 78.15
CDY28773 Canola cytosol 11.64 78.15
CDY01343 Canola cytosol 11.64 78.15
Bra020835.1-P Field mustard cytosol 74.71 78.15
EER99779 Sorghum cytosol 77.74 77.77
Zm00001d022286_P003 Maize plastid 77.55 77.52
Solyc06g071620.2.1 Tomato nucleus 71.46 77.46
TraesCS6A01G024900.1 Wheat nucleus 76.82 77.0
TraesCS6B01G034100.1 Wheat cytosol 76.68 76.82
TraesCS6D01G028200.1 Wheat cytosol 76.64 76.71
HORVU6Hr1G004350.3 Barley cytosol, mitochondrion, nucleus 76.78 76.53
CDY01342 Canola cytosol 38.75 76.35
CDY48648 Canola nucleus 35.91 76.19
CDY31853 Canola nucleus 41.82 76.02
AT2G42270.1 Thale cress cytosol 75.63 76.01
EES04337 Sorghum cytosol 75.54 75.89
TraesCS7D01G199800.1 Wheat cytosol 51.95 73.4
CDY22556 Canola cytosol 70.68 73.37
CDY56796 Canola cytosol 30.6 73.01
Bra008413.1-P Field mustard cytosol 30.78 71.79
TraesCS7B01G103700.1 Wheat cytosol 70.96 71.45
TraesCS7A01G238700.1 Wheat cytosol 69.08 71.4
Os03t0743800-00 Rice nucleus 69.9 71.18
KXG37223 Sorghum cytosol 71.55 70.87
HORVU7Hr1G040480.2 Barley cytosol, mitochondrion 69.72 70.79
Solyc06g065300.2.1 Tomato cytosol 20.61 68.29
CDX76356 Canola nucleus 11.82 65.15
CDY22275 Canola cytosol, nucleus, plasma membrane 30.14 62.02
KRH54676 Soybean nucleus 39.4 41.19
KRH07179 Soybean endoplasmic reticulum, plastid 11.22 20.59
KRH41401 Soybean nucleus 8.2 18.34
KRH60115 Soybean cytosol 7.92 17.89
KRH46878 Soybean nucleus 8.02 17.84
KRG98348 Soybean cytosol 10.22 16.62
KRH16213 Soybean nucleus 14.2 14.44
KRH74713 Soybean nucleus 7.42 13.94
Protein Annotations
Gene3D:1.10.10.2530Gene3D:1.10.150.20Gene3D:1.10.3380.10EntrezGene:100816176MapMan:16.4.7.1.4Gene3D:2.60.40.150
Gene3D:3.40.50.300InterPro:AAA+_ATPaseEMBL:ACUP02004897InterPro:C2_domain_sfncoils:CoilInterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_08G173500GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005524
InterPro:Helicase_ATP-bdInterPro:Helicase_CUniProt:I1KU63InterPro:IPR001650InterPro:IPR014001InterPro:IPR035892
InterPro:Ig_E-setEnsemblPlants:KRH43818ProteinID:KRH43818ProteinID:KRH43818.1InterPro:P-loop_NTPasePFAM:PF00270
PFAM:PF00271PFAM:PF02889PIRSF:PIRSF039073PFscan:PS51192PFscan:PS51194PANTHER:PTHR24075
PANTHER:PTHR24075:SF5SMART:SM00382SMART:SM00487SMART:SM00490SMART:SM00973SUPFAM:SSF158702
SUPFAM:SSF46785SUPFAM:SSF52540SUPFAM:SSF81296InterPro:Sec63-domUniParc:UPI0002338574InterPro:WH_DNA-bd_sf
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr8:+:13818249..13826916
Molecular Weight (calculated)
247410.0 Da
IEP (calculated)
5.683
GRAVY (calculated)
-0.376
Length
2183 amino acids
Sequence
(BLAST)
0001: MAHLGGGAEA HARFKQYEYR ANSSLVLTTD SRPRDTHEPT GEPESLWGKI DPKSFGDRAY RGRPPELDEK LEKAKNKKKK KDRDAAADDA TAVPSKRRRV
0101: QHDSVLSTSD DGVYQPKTKE TRAAYEAMLS VIQNQLGGQP LSIVSAAADE ILAVLKNDTV KNPDKKKDIE KLLNPIPGHV FDQLVSIGKL ITDFQEVVDV
0201: PNGSSAMDGE EGLDDDVGVA VEFEENEDDD EESDLDIVQD EEEDDEDVAE PNGSGAMQMG GIDDEDMEEG NEGMGLNVQD IDAYWLQRKI SQAFEQQIDP
0301: QHCQKLAEEV LKILAEGDDR EVENKLLFHL EFDKFSLIKF LLRNRLKIVW CTRLARAQDQ EEREKIEEEM KGTELQPILE QLHATRASAK ERQKNLEKSI
0401: REEARRLKDD TGGDGDKESR DRSRRGVADR DGESGWLKGQ RQMLDLDSIA FTQGGFFMAK KKCDLPDGSY RHLSKGYEEI HVPALKAKPL DPNEKLVKIS
0501: SMPDWAQPAF KGMTQLNRVQ SKVYETALFK PDNLLLCAPT GAGKTNVAVL TILQQIARHR NPEDGSIDHS AYKIVYVAPM KALVAEVVGN LSNRLQEYDV
0601: KVRELSGDQS LTRQQIEETQ IIVTTPEKWD IITRKSGDRT YTQLVKLLII DEIHLLHDNR GPVLESIVAR TVRQIETTKD YIRLVGLSAT LPNYEDVALF
0701: LRVDLKKGLF YFDNSYRPVP LSQQYVGITV KKPLQRFQLM NDICYEKVMA VAGKHQVLIF VHSRKETAKT ARAIRDAALA NDTLGRFLKE DSASREILHT
0801: HTDLVKSNDL KDLLPYGFAI HHAGMTRTDR QLVEDLFADG HVQVLVSTAT LAWGVNLPAH TVIIKGTQIY NPEKGAWTEL SPLDVMQMLG RAGRPQYDSY
0901: GEGIIVTGHS ELQYYLSLMN QQLPIESQFV SKLADQLNAE IVLGTVQNAR EACNWIGYTY LYVRMLRNPS LYGIAPDVLT RDITLEERRA DLIHTAATIL
1001: DRNNLVKYDR KSGYFQVTDL GRIASYYYIT HGSISTYNEH LKPTMGDIEL CRLFSLSEEF KYVTVRQDEK MELAKLLDRV PIPIKESLEE PSAKINVLLQ
1101: AYISQLKLEG LSLTSDMVFI TQSAGRLLRA LFEIVLKRGW AQLAEKALNL CKMGTKRMWS VQTPLRQFNG IPSDLLTKLE KKDLAWERYY DLSSQEIGEL
1201: IRAPKMGRTL HKFIHQFPKL NLAAHVQPIT RTVLRVELTI TPDFAWDDRI HGYVEPFWVI VEDNDGEYIL HHEYFMLKKQ YIDEDHTLNF TVPIYEPLPP
1301: QYFIRVVSDR WLGSQTVLPV SFRHLILPEK YPPPTELLDL QPLPVTALRN SSYESLYKDF KHFNPVQTQV FTVLYNSDDN VLVAAPTGSG KTICAEFAIL
1401: RNHQKGPDSV MRVVYVAPVE ALAKERYRDW ERKFGGGLKL RVVELTGETA TDLKLLEKGQ IIISTPEKWD ALSRRWKQRK HVQQVSLFII DELHLIGGQG
1501: GPILEVVVSR MRYIASQVEN KSRIVALSTS LANAKDLGEW IGATSHGLFN FPPGVRPVPL EIHIQGIDIT NFEARMQAMT KPTYTAIVQH AKNGKPALIF
1601: VPTRKHVRLT AVDMITYSGA DSGEKPFLLR SAEELEPFLD KITDEMLKVT LREGVGYLHE GLNSLDHDIV TQLFEAGWIQ VCVLNSSMCW GVTLLAHLVV
1701: VMGTQYYDGR ENAQTDYPVT DLLQMMGHAS RPLVDNSGKC VILCHAPRKE YYKKFLYEAF PVESHLHHFL HDNLNAEIVA GIIENKQDAV DYLTWTFMYR
1801: RLTQNPNYYN LQGVSHRHLS DHLSEMVENT LSDLEAGKCI TIEDDMELAP LNLGMIASYY YISYTTIERF SSSVTSKTKM KGLLEILSSA SEYAQLPIRP
1901: GEEEVVRKLI NHQRFSFENP KVTDPHVKAN ALLQAHFSRQ FVGGNLALDQ KEVLLSANRL LQAMVDVISS NGWLSLALLA MEVSQMVTQG MWERDSMLLQ
2001: LPHFTKDLAK KCQENPGKSI ETVFDLLEME DEERQKLLGM SDLQLLDIAR FCNRFPNIDL SYEVLDSDNV RAGEVVTVLV TLERDFEGRT EVGPVDAPRY
2101: PKAKEEGWWL IVGDTKTNLL LAIKRVSLQR KLKAKLEFDA PADAGRKSYS LYFMCDSYLG CDQEYGFTVD VNADGGDEDS GRD
Best Arabidopsis Sequence Match ( AT1G20960.1 )
(BLAST)
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
Arabidopsis Description
BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.