CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05970.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.26	77.68
PGSC0003DMT400053716	Potato	cytosol, mitochondrion	4.32	77.33
Solyc06g005990.2.1	Tomato	cytosol	72.43	71.42
CDX99082	Canola	cytosol	63.56	71.38
AT3G46960.1	Thale cress	nucleus	71.09	70.82
GSMUA_Achr9P03710_001	Banana	cytosol	69.3	70.51
Bra018181.1-P	Field mustard	nucleus	69.75	69.8
CDX86107	Canola	nucleus	69.67	69.52
TraesCS6A01G133400.3	Wheat	cytosol	64.61	63.42
KXG29518	Sorghum	cytosol	64.53	63.17
TraesCS6B01G161800.5	Wheat	nucleus	64.38	63.16
HORVU6Hr1G025670.1	Barley	nucleus	64.16	62.98
Zm00001d015314_P003	Maize	cytosol	64.01	60.84
KRH41401	Soybean	nucleus	26.23	36.07
KRH60115	Soybean	cytosol	25.41	35.26
KRH46878	Soybean	nucleus	25.71	35.17
KRH74713	Soybean	nucleus	19.0	21.94
KRH07179	Soybean	endoplasmic reticulum, plastid	11.25	12.69
KRH43818	Soybean	nucleus	16.62	10.22
KRH13647	Soybean	cytosol	16.54	10.17
KRH54676	Soybean	nucleus	14.83	9.53
KRH16213	Soybean	nucleus	14.53	9.08

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:100788432	MapMan:16.8.1.2.6.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300
EMBL:ACUP02010877	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_18G067400	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0006139	GO:GO:0006401	GO:GO:0006810	GO:GO:0006813	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016441	GO:GO:0016787	GO:GO:0035864	GO:GO:0040029
GO:GO:0055087	GO:GO:0070478	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1N032	InterPro:IPR001650
InterPro:IPR014001	EnsemblPlants:KRG98348	ProteinID:KRG98348	ProteinID:KRG98348.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131
PANTHER:PTHR12131:SF8	SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like
InterPro:Ski2_C	UniParc:UPI000233EB5B	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:+:6246475..6262080

Molecular Weight (calculated)

150382.0 Da

IEP (calculated)

5.893

GRAVY (calculated)

-0.336

Length

1342 amino acids

Sequence
(BLAST)

0001: MDPIQAANEL AFRVGFSGHS GHLRLEPLST EERRNPLRSI PDFIPPPAFP SETPESIKKY IEETYLQPRL DPDDFSPEKV GRQWEFDWFD RAKVPLEPSL
0101: PRTMVVPVWE PPFRRSNNGS VKGIWEPKFE EVDVADLTSG AVESGPLPRT SGKDFVRGSI NNRPFRPGGL DDSRSLDRIL PEGASNGEWV HEILNGGPAQ
0201: TIPPSLKQGL DFGMLKPYPC SWNVCKEANS LKSSSDEKLS GLSVQFDDLF KKAWDEDAVG DQEDGHLSEV ETITLEAEVG TTEVSSRAHE SEMSLDDILS
0301: ADSEGSKLHL DGFNDEIGQQ KKEAWAIHET SEQIVDSFHE LVPDMALEFP FELDAFQKEA IYYLEKGESV FVAAHTSAGK TVVAEYAFAL ASKHCTRAVY
0401: TAPIKTISNQ KYRDLCGKFD VGLLTGDVSL RPEASCLIMT TEILRSMLYR GADIIRDIEW VIFDEVHYVN DVERGVVWEE VIIMLPRHIN IVLLSATVPN
0501: TIEFADWIGR TKQKEIRVTG TTKRPVPLEH CLFYSGELYK ICESEKFLPQ GLKAAKKEAS RKKNLTAGGG SGPKPGISPG HDKARVQKRE NTSHTKHHGA
0601: NFYGTGRGYQ NNGNGQSNWE LRRADASMLL MLINKLSKKS LLPVVIFCFS KNRCDKSADS LTGTDLTSSS EKSEIRLFCD KAFSRLKGSD KNLPQVVRVQ
0701: NLLRRGIGVH HAGLLPIVKE VVEMLFCRGV IKVLFSTETF AMGVNAPART VVFDTLRKFD GKEFRQLLAG EYTQMAGRAG RRGLDKIGTV ILMCRDELPE
0801: ESDLEPVIVG SATRLESQFR LTYIMILHLL RVEELKVEDM LKRSFAEFHA QKKLPEMQQL LKRKLNQPTK AIECLKGEPT IEEYYDLYLE AETYSNQISE
0901: AILQSPSAQQ FLNTGRVVIV KSESAQDHLL GVVVETPSPT NKMYIVFVIK PDMPSSVDNA SSSGNMQNKS GAFDQGYFVM PKSRRVVVDE YSTSVSARKG
1001: KGVITIRLPY SGSACGMGYE VREVDSKEFL CICSSKIKID RVGLLEDISS SVYSKTVQLL MDLKSDGNKY PPALDPVKDL KLRDVKLVAT YHKWTRLLEK
1101: MSQNQCHGCI KLEEHLKLAK EIKKHKEEVY ALQFQMSDEA LKQMPDFQGR IDVLKQIGCI DEDLVVQMKG RVACEMNSGE ELICTECLFE NQMDELEPEE
1201: AVAIMSAFVF QQKNTSEPSL TPKLSEAKHR LYQTAIRLGE LQAHFNLPIN PAEYAQENLK FGLVEVVYEW AKGTPFADIC ELTDVPEGLI VRTIVRLDET
1301: CREFKNAAAI MGNSALCKKM EIASNAIKRD IVFAASLYIT GV

Best Arabidopsis Sequence Match ( AT3G46960.1 )
(BLAST)

0001: MNKVEAGNEL GFRVGFSGHG GHLRVEPFYT AERDDALNSL PDFVSPPAFA KETKESIKKH IEEKYLIPRL EPDQFSAEKA ENQWDFDWFS RVKMPLQPSL
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV

Arabidopsis Description

SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.