Factsheet for Bra018181.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99082	Canola	cytosol	88.74	99.58
AT3G46960.1	Thale cress	nucleus	91.05	90.65
PGSC0003DMT400053716	Potato	cytosol, mitochondrion	4.47	80.0
VIT_06s0004g05970.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.96	73.56
KRG98348	Soybean	cytosol	69.8	69.75
Solyc06g005990.2.1	Tomato	cytosol	69.87	68.85
GSMUA_Achr9P03710_001	Banana	cytosol	65.18	66.26
KXG29518	Sorghum	cytosol	63.31	61.93
TraesCS6A01G133400.3	Wheat	cytosol	63.01	61.81
HORVU6Hr1G025670.1	Barley	nucleus	62.86	61.67
TraesCS6B01G161800.5	Wheat	nucleus	62.79	61.55
Zm00001d015314_P003	Maize	cytosol	63.46	60.27
Bra035425.1-P	Field mustard	nucleus	11.26	39.95
Bra027835.1-P	Field mustard	nucleus	25.06	35.15
Bra029783.1-P	Field mustard	cytosol	25.35	34.55
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	14.69	31.77
Bra016240.1-P	Field mustard	plastid	17.9	20.58
Bra008413.1-P	Field mustard	cytosol	9.77	14.0
Bra033025.1-P	Field mustard	nucleus	10.66	13.07
Bra022718.1-P	Field mustard	cytosol	16.41	10.05
Bra012260.1-P	Field mustard	cytosol	16.11	9.88
Bra020835.1-P	Field mustard	cytosol	15.36	9.87
Bra029333.1-P	Field mustard	plastid	13.87	8.72
Bra040938.1-P	Field mustard	nucleus	12.68	7.99
Bra011372.1-P	Field mustard	nucleus	12.83	7.48

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.6.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra018181
EnsemblPlants:Bra018181.1	EnsemblPlants:Bra018181.1-P	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006139
GO:GO:0006401	GO:GO:0006810	GO:GO:0006813	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016441	GO:GO:0016787	GO:GO:0035864	GO:GO:0040029	GO:GO:0055087
GO:GO:0070478	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4DNU3
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF8	SMART:SM00487	SMART:SM00490	SMART:SM01142
SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI000253F4E0	InterPro:rRNA_proc-arch_dom	SEG:seg

Description

AT3G46960 (E=0.0) | ATP binding / ATP-dependent helicase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding

Coordinates

chrA06:+:10862322..10869102

Molecular Weight (calculated)

150075.0 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.360

Length

1341 amino acids

Sequence
(BLAST)

0001: MNKVEAANEL AFRVGISGHG GHLRVEPLYT EESDGAVNSL PDFVSPPAFA KESKESIKEH IEEKYLLPRL EPQQFSAENA QNQWDFDWFA RVKVPLQPSL
0101: PRSVLVPTWE LPFRRQKTGR WEPKSVEVDL SQQMYGDQDS GFFPRMVGPP KDFLRGSANN RPFRPGGLED SQSSERILPD GVCDGQWVQE LLNGGPPLNV
0201: PPSFKQSLDL GHLMPYPQTW KVYEDQSSHG NASDDKPSKL SIQFDDLFKT VLEEDTVFEL DGDDRSAGSE SPKAETEPEP EAIKGGEPSK GTDTDVTVLD
0301: EILSSAKTAI MSDEAIAGNS GKQLRKEGWA TKGDSQDIAD RFHELVPDMA MEFPFELDIF QKEAICCLEK GESVFVAAHT SAGKTVVAEY AFALATKHCT
0401: RAVYTAPIKT ISNQKYRDFC GKFDVGLLTG DVSIRPEASC LIMTTEILRS MLYRGADIIR DIEWVVFDEV HYVNDVERGV VWEEVIIMLP RHINFVLLSA
0501: TVPNTFEFAD WIGRTKQKEI RVTGTTKRPV PLEHCLFYSG ELYKVCENEV FISKGIKDAK DTHKKKNSSA VSVGPKQHAG SSAHQDGNKS QKHEAHSRGK
0601: QNKHSNVKDL AKSSYGGNGQ NNGAFRRSAA SNWLLLINKL SKKSLLPVVV FCFSKNYCDR CADALTGTDL TTSSEKSEIR VFCDKAFSRL KGSDRNLPQV
0701: LRVQSLLHRG IGVHHAGLLP IVKEVVEMLF CRGVIKVLFS TETFAMGVNA PARTVVFDAL RKFDGKEFRS LLPGEYTQMA GRAGRRGLDK TGTVVVMCRD
0801: EVPDESDLRR IIVGSATRLE SQFRLTYIMI LHLLRVEELK VEDMLKRSFA EFHAQKKLPE KQQLLMLKRS LPVKTIECIK GEPAIEDYYE MYMEANECNS
0901: KMSEAVMQSP NTQQHLVPGR VVVMKSETGI DNLLGVVLKG LSNRQYVVLV IKSEIPPPEK NMVSIDKKSS DPSQGFFIAP KSKRGFEDDY YSTSSSRKGT
1001: GVIKIELPYH GVAAGVGYEV RAFDNKEVLC ICVSKIKIDQ VRLLEDGNKA AFSQTVQQLL DLKSDGNKFP PALDPVKDLK LKDAELVETY YKWTSLLQKM
1101: SMNKCHGCVK LDEHMKLARE IRKHKKDLKD LEFQMSDEAL LQMPAFQGRI DVLKKIGCID DDLVVQIKGR VACEMNSGEE LICTVCLFEN QFEELEPEEA
1201: VAIMSAFVFQ QKNTSAPSLT PKLAKAKQRV YDTAIKLGEL QAHYNLQIDP EEYAQESLKF GLVEVVYEWA KGTPFAEICE LTDVPEGLIV RTIVRLDETC
1301: REFKNAAAIM GNSALHKKMD SASNAIKRDI VFAASLYVTG V

Best Arabidopsis Sequence Match ( AT3G46960.1 )
(BLAST)

0001: MNKVEAGNEL GFRVGFSGHG GHLRVEPFYT AERDDALNSL PDFVSPPAFA KETKESIKKH IEEKYLIPRL EPDQFSAEKA ENQWDFDWFS RVKMPLQPSL
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV

Arabidopsis Description

SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.