Factsheet for VIT_06s0004g05970.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053716	Potato	cytosol, mitochondrion	5.67	82.67
KRG98348	Soybean	cytosol	77.68	63.26
Solyc06g005990.2.1	Tomato	cytosol	77.4	62.16
GSMUA_Achr9P03710_001	Banana	cytosol	73.47	60.88
AT3G46960.1	Thale cress	nucleus	74.57	60.5
CDX86107	Canola	nucleus	73.92	60.07
Bra018181.1-P	Field mustard	nucleus	73.56	59.96
CDX99082	Canola	cytosol	65.23	59.67
TraesCS6A01G133400.3	Wheat	cytosol	69.08	55.23
TraesCS6B01G161800.5	Wheat	nucleus	68.98	55.12
HORVU6Hr1G025670.1	Barley	nucleus	68.89	55.08
KXG29518	Sorghum	cytosol	68.89	54.92
Zm00001d015314_P003	Maize	cytosol	69.53	53.82
VIT_11s0065g00340.t01	Wine grape	cytosol	31.29	34.37
VIT_06s0009g01750.t01	Wine grape	cytosol	30.83	33.8
VIT_01s0026g01000.t01	Wine grape	cytosol	23.06	23.68
VIT_06s0004g05980.t01	Wine grape	mitochondrion	5.76	18.92
VIT_14s0066g00880.t01	Wine grape	nucleus	12.99	11.14
VIT_17s0000g07240.t01	Wine grape	cytosol	6.59	10.13
VIT_05s0102g00480.t01	Wine grape	cytosol	16.38	8.66
VIT_17s0000g07230.t01	Wine grape	cytosol	9.61	7.66
VIT_04s0008g03960.t01	Wine grape	nucleus	15.0	7.6

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:100253599	wikigene:100253599	MapMan:16.8.1.2.6.1	Gene3D:2.40.30.300
Gene3D:3.40.50.300	ProteinID:CCB43509	ProteinID:CCB43509.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6GUV1
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003724
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006401	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0055087	GO:GO:0070478	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100253599	wikigene:LOC100253599	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF8	SMART:SM00487	SMART:SM00490	SMART:SM01142
SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	TIGR:TC58799	UniParc:UPI0002108F52	ArrayExpress:VIT_06s0004g05970
EnsemblPlantsGene:VIT_06s0004g05970	EnsemblPlants:VIT_06s0004g05970.t01	unigene:Vvi.19591	RefSeq:XP_002279903	RefSeq:XP_002279903.2	InterPro:rRNA_proc-arch_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:6717193..6776592

Molecular Weight (calculated)

122074.0 Da

IEP (calculated)

7.155

GRAVY (calculated)

-0.251

Length

1093 amino acids

Sequence
(BLAST)

0001: MNNIIFFFIV RLQPSMLEVQ LDEVEASSNV GDLESSVLDE ILSVESGSKP GLDGTSDDGG RQKKEAWAVS GGNEGIADHF HELVPDMALD FPFELDTFQK
0101: EAIYYLEKGD SVFVAAHTSA GKTVVAEYAF ALASKHCTRA VYTAPIKTIS NQKYRDFCGK FDVGLLTGDV SLRPEASCLI MTTEILRSML YKGADIIRDI
0201: EWVIFDEVHY VNDVERGVVW EEVIIMLPRH INIVLLSATV PNTIEFADWI GRTKQKQIRV TGTTKRPVPL EHCIFYSGEL YKICESETFL PQGLKTAKDV
0301: HKKKNLSTGG GGSGTYSGPP SAAHDGARAQ RRENPGRGKQ NKYSGSQKVG NFYGTGGGNQ NSSGSQSNWG SRRSEASLWL LLINKLSKKS LLPVVIFCFS
0401: KNRCDISADK MTGIDLTSSS EKHEIHVFCE RAFSRLKGSD RNLPQVIRVQ SLLRRGIGVH HAGLLPIVKE VVEMLFCRGV VKVLFSTETF AMGVNAPART
0501: VVFDSLRKFD GREFRQLLPG EYTQMAGRAG RRGLDKIGTV VVMCRDEIPD ERDLKHVIVG SATRLASQFR LTYIMILHLL RVEELKVEDM LKRSFAEFHA
0601: QKKLPEKQQL LMRKLAQPTK TIECIKGEPT IEEYYDMYTE AEQHSNQILE TVMQSSAAQQ FLTLGRVVVV KSQSVQDHLI GVVVKAPSAS SKQYIVLVLK
0701: PHLPSTLQTP SESGNLQDKK SGAFPEGHFI LPKAKRALED DYYTSTTSRK ASGTINIKLP YHGAAAGVSY EVRGIDNKEF LCICIHKIKI DPVGLLEDAN
0801: NAAYSKTVQQ LLELKSKGHK YPPALDPLKD LKLKDMTLVE TYYKWNSLLQ KMADNKCHEC VKLEEHIKLA KELKRHKEEV NALRFQMSDE ALQQMPDFQG
0901: RIDVLQEIGC IDADLVVQIK GRVACEMNSG EELICTECLF ENQLDDLEPE EAVALMSALV FQQKNTSEPS LTPKLSQAKQ RLYNTAIRLG ELQAQFKLQI
1001: SPEEYAQDNL KFGLVEVVYE WAKGTPFADI CELTDVPEGL IVRTIVRLDE TCREFRNAAA IMGNSALHKK MEAASNAIKR DIVFAASLYI TGL

Best Arabidopsis Sequence Match ( AT3G46960.2 )
(BLAST)

0001: MYGDQDSGFF PRMVGPPKDF LRGSVNNRPF RPGGLEDSQS SERVLPEGVS SGQWVQELLN GGPAQTVPPS FKQSLDLGDL MPYPQTWSVY EDHSSHGNAS
0101: DENSSKLSIQ FDDLFKKAWE EDTFSELEGD DHTAGSESPK AEAEPDAKAS ISNEVSKGLE TDVTVLDEIL SSAKTAIMSE EAVTGSSDKQ LRKEGWATKG
0201: DSQDIADRFY ELVPDMAIEF PFELDNFQKE AICCLEKGES VFVAAHTSAG KTVVAEYAFA LATKHCTRAV YTAPIKTISN QKYRDFCGKF DVGLLTGDVS
0301: IRPEASCLIM TTEILRSMLY RGADIIRDIE WVIFDEVHYV NDVERGVVWE EVIIMLPRHI NFVLLSATVP NTFEFADWIG RTKQKEIRVT GTTKRPVPLE
0401: HCLFYSGELY KVCENEVFLS KGIKDAKDSQ KKKNSNAVSV APKQQMGSSA HQDGSKSQKH EAHSRGKQNK HSSVKDVGKS SYSGNSQNNG AFRRSAASNW
0501: LLLINKLSKM SLLPVVVFCF SKNYCDRCAD ALTGTDLTSS SEKSEIRVFC DKAFSRLKGS DRNLPQVLRL QSLLHRGIGV HHAGLLPIVK EVVEMLFCRG
0601: VIKVLFSTET FAMGVNAPAR TVVFDALRKF DGKEFRQLLP GEYTQMAGRA GRRGLDKTGT VVVMCRDEVP DESDLRRVIV GSATRLESQF RLTYIMILHL
0701: LRVEELKVED MLKRSFAEFH AQKKLPEKQQ LLMIKRSLPT KHIECIKGEP AIEDYYDMYM EANEYNNKMS EAVMQSPYAQ SFLVQGRVVV MKSGMGIDNL
0801: LGIVLKGPSN TNRQYVVLVI KSEIPPPEKN MVSIGKKSSD PSQGYFIAPK SKRGFEEEFY TKPSSRKGPV VIKIELPYHG VAAGVGYEVK GFDNKEFLCI
0901: CDSKIKIDQV RLLEDGNKAA FSQTVQQLLD LKSDGNKFPP ALDPVKDLKL KDAELVETYY KWTNLLQKMS MNKCHGCVKL EEHMKLAREI KKHKTDLKDL
1001: EFQMSDEALL QMPAFQGRID VLKNIGCIDD DLVVQIKGRV ACEMNSGEEL ICTVCLFENQ FEELEPEEAV AIMSAFVFQQ KNTSAPTLTP KLAKAKQRLY
1101: DTAIRLGELQ AQYNLQIDPE EYAQENLKFG LVEVVYEWAK GTPFAEICEL TDVPEGLIVR TIVRLDETCR EFKNAAAIMG NSALHKKMDA ASNAIKRDIV
1201: FAASLYVTGV

Arabidopsis Description

SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.