Factsheet for VIT_14s0066g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001251	Potato	nucleus	17.73	81.3
Os02t0617500-01	Rice	cytosol	37.33	76.4
KRH07179	Soybean	endoplasmic reticulum, plastid	63.29	67.82
CDY49767	Canola	nucleus	58.67	66.14
Solyc02g086580.2.1	Tomato	cytosol	62.43	66.11
CDY03992	Canola	nucleus	58.82	66.08
Bra033025.1-P	Field mustard	nucleus	56.39	65.72
AT3G27730.2	Thale cress	nucleus	58.51	65.27
GSMUA_Achr1P12000_001	Banana	cytosol, nucleus, plastid	54.04	62.41
HORVU4Hr1G049830.57	Barley	nucleus	52.31	59.45
TraesCS4D01G171000.1	Wheat	nucleus	52.31	54.27
TraesCS4A01G136200.1	Wheat	nucleus	53.96	53.71
OQU85316	Sorghum	nucleus	54.43	53.59
TraesCS4B01G168700.1	Wheat	nucleus	53.8	53.55
PGSC0003DMT400001255	Potato	cytosol, mitochondrion	30.9	53.53
Zm00001d051111_P001	Maize	nucleus	53.8	53.05
VIT_06s0009g01750.t01	Wine grape	cytosol	10.98	14.04
VIT_01s0026g01000.t01	Wine grape	cytosol	11.69	14.0
VIT_17s0000g07240.t01	Wine grape	cytosol	7.29	13.08
VIT_06s0004g05970.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.14	12.99
VIT_11s0065g00340.t01	Wine grape	cytosol	9.88	12.66
VIT_05s0102g00480.t01	Wine grape	cytosol	20.08	12.39
VIT_06s0004g05980.t01	Wine grape	mitochondrion	3.14	12.01
VIT_17s0000g07230.t01	Wine grape	cytosol	12.39	11.53
VIT_04s0008g03960.t01	Wine grape	nucleus	16.63	9.82

Protein Annotations

Gene3D:1.10.10.2530	Gene3D:1.10.150.20	Gene3D:1.10.3380.10	MapMan:13.3.6.5.1.1	Gene3D:3.40.50.300	ProteinID:CCB58494
ProteinID:CCB58494.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HUX6	EMBL:FN596252	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003774	GO:GO:0003777	GO:GO:0003779	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005856	GO:GO:0006139	GO:GO:0007018
GO:GO:0008017	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016459
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF02889	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF388	SMART:SM00487	SMART:SM00490	SMART:SM00973	SUPFAM:SSF158702	SUPFAM:SSF52540
InterPro:Sec63-dom	UniParc:UPI00021093DE	ArrayExpress:VIT_14s0066g00880	EnsemblPlantsGene:VIT_14s0066g00880	EnsemblPlants:VIT_14s0066g00880.t01	SEG:seg

Description

No Description!

Coordinates

chr14:+:27348198..27357069

Molecular Weight (calculated)

144607.0 Da

IEP (calculated)

7.701

GRAVY (calculated)

-0.316

Length

1275 amino acids

Sequence
(BLAST)

0001: MSNLDSYSLK SVLDLPVPFQ SAFSFRYFNS LQSECFSACF LSDVNMVISA PTGSGKTVLF ELCILRLLSR FISEEGRFIH VKGTLKTIYI APSKALVQEK
0101: LRDWNQKLGS LGINCLELTG DNEFYNIRNI QEADIIVTTP EKFDAVTRYR IKDGGLSFFS DIALVLIDEV HLLNDPRGAA LEAIVSRIKM LARNPEMKLS
0201: SLSHVRFLAV SATIPNIEDL AEWLMVPAQG IKRFGEEMRP VKLTTKVFGY TPAKNDFLFE KRLQNYIFDI LMQYSRGKSA LVFCSTRKGA QEAAQRISQI
0301: AMNYGHSNPF IRSKEQEERL REASLSCSDK QMQSYILYGV GYHNGGLCPK DRNLIEGLFL KGDIQILCTT NTLAHGINLP AHTVVIKSTQ HFNKEKGLYM
0401: EYDRSMILQM CGRAGRPPFE DTGMAIIMTR RETVHLYENL LNGCELVESQ LLSCVTEHLT AEIVQLTVSD IARAIEWMKC SYLYVRMKKN PEKYAFKKGI
0501: PGNLIEKYTQ DICVQKVNEL SQHQMIWTDE DGFLLKPLEP GRLMTKYYLK FGTMKHIMQT PLNCSLEDAL HIICRSEEIA WIQLRRNEKK FLNDINMDKD
0601: GQLRFHILGD KGKRKRRIQT REEKIFVLAN DCLTGNPSVH DLSLTQDANA ICSNGCRIAK CMKEYFIYKK SYKGALNSIL LSKCLLQKLW DDSPYLLKQL
0701: PGIGMVTAKA LHSMGIVSFE ALAEADPRRI EIVTGRKYPF GNHIKESLSS LPPKVELKIE EIECQRQGKS KIVLILTRLS QSFQSIKRYY ADMVVGLEED
0801: NLILFHEKIS RVDEFSSPYS TTILLSTPQQ GKLTVKADLI FEEYIGIDLH QKLLVVKEIN SNMIHARGSK QLSSFPLPKE VYVIEDDNED ASHSSSKGLD
0901: ISKKSKREMD SLPNFKLIDE ESEEEGSPAI ETEDDECKII TEQTVFEHIR KKSKSFNVLT KSNASVSPSS EALILTRKRT HEQQLELHVT EALEETERSK
1001: IPRRAMVSPF LHSREAELNG PGISKNSTTK YQPATGSLVV MNFMDDRGAF LFYFIKCYYY YHYSVLYGVL NHLFVSIQAD LPERTESTSQ IVTENTIFDH
1101: IRRKAKNFLV FNKSETPESD STILTKEHFS ENQPVLHEDS FDTLEGTNSS EALKTTVVIS DSEPKKMEKE SHHVREGAKM DPNIISGSTC STHGSLDPLP
1201: EVSSIQTDPT HIPSFYVARV KNNVQNADPG MCVKNIRKRS LSPNGSKGQC CPAATPGKIR EVDSFLGFKS VFSFL

Best Arabidopsis Sequence Match ( AT3G27730.1 )
(BLAST)

0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL

Arabidopsis Description

RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.