Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0617500-01 | Rice | cytosol | 43.3 | 76.73 |
| PGSC0003DMT400001251 | Potato | nucleus | 17.93 | 71.22 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 60.51 | 59.54 |
| CDY49767 | Canola | nucleus | 58.79 | 57.38 |
| Bra033025.1-P | Field mustard | nucleus | 56.7 | 57.22 |
| CDY03992 | Canola | nucleus | 58.61 | 57.0 |
| AT3G27730.2 | Thale cress | nucleus | 58.7 | 56.69 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 59.33 | 55.04 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 62.41 | 54.04 |
| Solyc02g086580.2.1 | Tomato | cytosol | 58.24 | 53.41 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 59.24 | 53.21 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 61.41 | 52.93 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 60.96 | 52.54 |
| Zm00001d051111_P001 | Maize | nucleus | 60.69 | 51.82 |
| OQU85316 | Sorghum | nucleus | 60.69 | 51.74 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 26.09 | 39.13 |
| GSMUA_Achr2P17890_001 | Banana | cytosol, nucleus, plastid | 12.23 | 13.34 |
| GSMUA_Achr3P29700_001 | Banana | cytosol | 20.92 | 12.55 |
| GSMUA_Achr3P05450_001 | Banana | nucleus | 11.32 | 11.57 |
| GSMUA_Achr9P03710_001 | Banana | cytosol | 13.5 | 11.3 |
| GSMUA_Achr8P28180_001 | Banana | cytosol | 19.57 | 10.77 |
| GSMUA_Achr8P22600_001 | Banana | plastid | 11.05 | 10.12 |
| GSMUA_Achr11P... | Banana | nucleus | 17.3 | 9.35 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSMUA_Achr1G12000_001 |
| EnsemblPlants:GSMUA_Achr1P12000_001 | EnsemblPlants:GSMUA_Achr1T12000_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| UniProt:M0RZ58 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF02889 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF388 | SMART:SM00487 | SMART:SM00490 | SMART:SM00973 |
| SUPFAM:SSF158702 | SUPFAM:SSF52540 | InterPro:Sec63-dom | UniParc:UPI000295D957 | : | : |
Description
DEAD/DEAH box helicase domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G12000_001]
Coordinates
chr1:-:9159682..9176161
Molecular Weight (calculated)
124849.0 Da
IEP (calculated)
7.289
GRAVY (calculated)
-0.208
Length
1104 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGLYRDQHSL IPVADLPQPF RSTFNFRWYF NSLQSECFSG CFLSDINMVI SAPTASGKTV LFELCILRLM SKFLSSEGKF NHKKGTLKTI YIAPSKALVQ
0101: EKLRDWCMKF HSLAIKCLEM TGDNESYKAK NIQEADIILT TPEKFDAVTR HGARNGDLSF FSDIALVLID EVHFLNDPRG ATLEAIISRI KMLSRISEMR
0201: SSPLAYVRFL AVSATIPNIQ DIAEWLSVPA QGIKRFGEEM RPVQLMTKVF GYAPAKNDFM FERSWEYITD ILMQYSRGKS ALIFCSTRKG ALESAQCLSH
0301: IAMSLGYSNP FIKSIEQQQK LKEASLSFTD KQMQSCIIHG VGYHNGGLCM KDRNLVEGLF LKGDLQILCT TNTLAHGINL PAHTVVVKST QYFNREKGLY
0401: MEYELSMVLQ MCGRAGRPPF DDAGTVIIMT RRDTVHLYEN LLNGCEMVES QLLTCAMEHL TAEIVQLIIS DICLAIEWLK CSYLYVRIKK NPENYGIERG
0501: IPHECLEKHM QEICVKKIKE LSEHGMIWTD DDGFLLKPLE PGILMTKFYL KFNTMKLIVN APGSCSVEDV LRIISHSEEL SWIQLRRNEK KLLNDVNSDK
0601: EGRLRFHVLS ENGKRKKRIQ TREEKIFVLA NDCLTGDPLV HDLSLNQDMN SICMSGCRIA KCIKQCFIYR KNYKGTITST LLAKCLHHRL WENSPYLLKQ
0701: LPGIGMVTAK ALHSAGINSF ESLGAADPRK IEIITGRKYP FGNHVKESLL LLPPKVEIKM EEAECKKPGK LKLIVTLNRT CLSATSTKHH YADMLVGSDE
0801: DNMILFHEKI RAEEFPSPYV VTVLVSCPQN ARVTLKADLI FEEYVGLDLH EKLVVTKGNN SIMTRGPLCE DSMPYALPEE IYLIEDDQKS SSKIMCDETL
0901: DLDNLRVNSS MPSFDLLQEE TGKGLDALTP EPSETECKTK SIEIIFEHIR KKSKSFPTLL TSKVMDYTCQ PLVLRRDTSK KQGFDVEADL NHIILIDSEP
1001: SEVSQELSLP VSFLTETERA VTTSNLNSVL NPQLPYKLSP TCHQPGCNKP CSDSLETVQT VGCKRSFSNE SNPISESPIC SQGHSNSIRY SDMLTYSLSR
1101: IKMC
0101: EKLRDWCMKF HSLAIKCLEM TGDNESYKAK NIQEADIILT TPEKFDAVTR HGARNGDLSF FSDIALVLID EVHFLNDPRG ATLEAIISRI KMLSRISEMR
0201: SSPLAYVRFL AVSATIPNIQ DIAEWLSVPA QGIKRFGEEM RPVQLMTKVF GYAPAKNDFM FERSWEYITD ILMQYSRGKS ALIFCSTRKG ALESAQCLSH
0301: IAMSLGYSNP FIKSIEQQQK LKEASLSFTD KQMQSCIIHG VGYHNGGLCM KDRNLVEGLF LKGDLQILCT TNTLAHGINL PAHTVVVKST QYFNREKGLY
0401: MEYELSMVLQ MCGRAGRPPF DDAGTVIIMT RRDTVHLYEN LLNGCEMVES QLLTCAMEHL TAEIVQLIIS DICLAIEWLK CSYLYVRIKK NPENYGIERG
0501: IPHECLEKHM QEICVKKIKE LSEHGMIWTD DDGFLLKPLE PGILMTKFYL KFNTMKLIVN APGSCSVEDV LRIISHSEEL SWIQLRRNEK KLLNDVNSDK
0601: EGRLRFHVLS ENGKRKKRIQ TREEKIFVLA NDCLTGDPLV HDLSLNQDMN SICMSGCRIA KCIKQCFIYR KNYKGTITST LLAKCLHHRL WENSPYLLKQ
0701: LPGIGMVTAK ALHSAGINSF ESLGAADPRK IEIITGRKYP FGNHVKESLL LLPPKVEIKM EEAECKKPGK LKLIVTLNRT CLSATSTKHH YADMLVGSDE
0801: DNMILFHEKI RAEEFPSPYV VTVLVSCPQN ARVTLKADLI FEEYVGLDLH EKLVVTKGNN SIMTRGPLCE DSMPYALPEE IYLIEDDQKS SSKIMCDETL
0901: DLDNLRVNSS MPSFDLLQEE TGKGLDALTP EPSETECKTK SIEIIFEHIR KKSKSFPTLL TSKVMDYTCQ PLVLRRDTSK KQGFDVEADL NHIILIDSEP
1001: SEVSQELSLP VSFLTETERA VTTSNLNSVL NPQLPYKLSP TCHQPGCNKP CSDSLETVQT VGCKRSFSNE SNPISESPIC SQGHSNSIRY SDMLTYSLSR
1101: IKMC
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.