Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G171000.1 | Wheat | nucleus | 94.15 | 98.13 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 97.42 | 97.42 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 83.76 | 95.63 |
| Os02t0617500-01 | Rice | cytosol | 43.56 | 89.57 |
| OQU85316 | Sorghum | nucleus | 74.47 | 73.67 |
| Zm00001d051111_P001 | Maize | nucleus | 73.54 | 72.85 |
| PGSC0003DMT400001251 | Potato | nucleus | 14.91 | 68.7 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 52.54 | 60.96 |
| CDY49767 | Canola | nucleus | 50.74 | 57.47 |
| Bra033025.1-P | Field mustard | nucleus | 48.95 | 57.31 |
| CDY03992 | Canola | nucleus | 50.59 | 57.09 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 51.44 | 55.38 |
| AT3G27730.2 | Thale cress | nucleus | 49.26 | 55.21 |
| Solyc02g086580.2.1 | Tomato | cytosol | 50.98 | 54.24 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 53.55 | 53.8 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 23.5 | 40.9 |
| TraesCS6B01G147700.1 | Wheat | cytosol | 2.58 | 18.44 |
| TraesCS2B01G179600.1 | Wheat | cytosol | 10.85 | 13.82 |
| TraesCS4B01G094600.1 | Wheat | nucleus | 10.85 | 12.68 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 12.57 | 11.77 |
| TraesCS6B01G342300.1 | Wheat | plastid | 10.93 | 11.65 |
| TraesCS4B01G247900.1 | Wheat | mitochondrion, peroxisome | 18.42 | 11.36 |
| TraesCS6B01G034100.1 | Wheat | cytosol | 19.13 | 11.24 |
| TraesCS7B01G103700.1 | Wheat | cytosol | 18.97 | 11.21 |
| TraesCS1B01G336400.1 | Wheat | plastid | 16.47 | 10.13 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF02889 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF388 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 | SUPFAM:SSF52540 | InterPro:Sec63-dom | EnsemblPlantsGene:TraesCS4B01G168700 |
| EnsemblPlants:TraesCS4B01G168700.1 | TIGR:cd00046 | TIGR:cd00079 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:368843026..368851299
Molecular Weight (calculated)
143157.0 Da
IEP (calculated)
8.349
GRAVY (calculated)
-0.332
Length
1281 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAMGPLGDS YALRCVSDLP PPFRPVFGFR YFNSLQSECF PVCFLSDVNM VVSAPTGSGK TVLFELCILR LLSRFLTTDW RFSLLKGTLK TIYIAPMKAL
0101: VQEKMRDWKV KLGSLGINCL EMTGDSEFFN KKAIHDSDLI LTTPEKFDSM SRHGVRDGGL GFFSDIALVL IDEVHLLNDP RGAALEAVVS RIKMLSRLGN
0201: MKSAPLENVR FIAVSATISN AEDIAEWLLA PPEGIKRFGE EMRPVKLTTK ILGYAPAKND FLFERRLQSF IFDILMQHSR GKSALVFCST RKGAQEAAQC
0301: LSQTAGSLGY SNPFMKSMQQ YEHLREASLT CSDKQLQSCI VHGVGFHNGG LCLKDRSLVE GLFVKGDLQI LCTTNTLAHG INLPAHTVVI KSTQFFNKEK
0401: GSYVEYERSM VLQMCGRAGR PPFDDTGTVV IMTRRETVHL YENLLSGCEM VESQLLPCAV EHLNAEIVQL TVSDITLAIE WLKCSYLYIR IKKNPEHYGI
0501: KRGIPRDLLE KQMRDICVEK IHELGEYGLI WTDGDGFSLK PLEPGRLMTK FYLKFDTMKL IVKASACCSL EDLLHIICRS AEISWIQLRR NEKKTLNDIN
0601: SDKEGRLRFH VVSENGKKKK RIQTREDKIF VLANDCLTGD PLMHDLSLNQ ETNSICSNGC RIAKCMKEYF IYKRSYRSAI NSMLLAKCLD QKLWESSLFL
0701: LKQLPGIGIV TAKALKAAGV DSFESLATAD ARKLESATGR NYPFGNQIKE SLSSLPPKID IQIEDAGNRQ GKSTITVTLS RQSQAVRSSK QNYVDMIVGS
0801: EEDNMILFHE KIRAREFSSP YSVKLLVPCP QSARVTLKVD LIFEEHVGID IHKKHVVSRE DDVHVTKAYG TEKQKPLISL PADICLVSSR TAETSPAQPH
0901: IGRSPLSKEV CVIEDDDGAN VPDKVDNMPG TRTFNNLASL EVPSFDLMLE EDNGDMQDVS FPEPAKADCR SATSNTIFDH IRKKSRDFPT LMLSKSMDSS
1001: YEPLILKKMK TSRGQFNLDQ GILHANEVTP MDSEHSELRV SPTNTAEKCR RILSRTSEKS CSLFAEKVYS PFEKSKSLSR IPDENSVQFA DRRGSLSEKS
1101: KSLSRIPDEN SVQFAVRTDS LSEKTKILWT AADENSHQFG GKRDSPSEKS KILMRPPDDG TLQFAGRRGS PSEKSNVLSR TRDENSLQFA AKRDSSSAKS
1201: NVLSKTPDMD SAQFAGRRDN PSEKNKLCSS SPFPDLQATR QAPATVQPLR IQDYCKDILA SSKGSGTGEP FLGFKSVFSF L
0101: VQEKMRDWKV KLGSLGINCL EMTGDSEFFN KKAIHDSDLI LTTPEKFDSM SRHGVRDGGL GFFSDIALVL IDEVHLLNDP RGAALEAVVS RIKMLSRLGN
0201: MKSAPLENVR FIAVSATISN AEDIAEWLLA PPEGIKRFGE EMRPVKLTTK ILGYAPAKND FLFERRLQSF IFDILMQHSR GKSALVFCST RKGAQEAAQC
0301: LSQTAGSLGY SNPFMKSMQQ YEHLREASLT CSDKQLQSCI VHGVGFHNGG LCLKDRSLVE GLFVKGDLQI LCTTNTLAHG INLPAHTVVI KSTQFFNKEK
0401: GSYVEYERSM VLQMCGRAGR PPFDDTGTVV IMTRRETVHL YENLLSGCEM VESQLLPCAV EHLNAEIVQL TVSDITLAIE WLKCSYLYIR IKKNPEHYGI
0501: KRGIPRDLLE KQMRDICVEK IHELGEYGLI WTDGDGFSLK PLEPGRLMTK FYLKFDTMKL IVKASACCSL EDLLHIICRS AEISWIQLRR NEKKTLNDIN
0601: SDKEGRLRFH VVSENGKKKK RIQTREDKIF VLANDCLTGD PLMHDLSLNQ ETNSICSNGC RIAKCMKEYF IYKRSYRSAI NSMLLAKCLD QKLWESSLFL
0701: LKQLPGIGIV TAKALKAAGV DSFESLATAD ARKLESATGR NYPFGNQIKE SLSSLPPKID IQIEDAGNRQ GKSTITVTLS RQSQAVRSSK QNYVDMIVGS
0801: EEDNMILFHE KIRAREFSSP YSVKLLVPCP QSARVTLKVD LIFEEHVGID IHKKHVVSRE DDVHVTKAYG TEKQKPLISL PADICLVSSR TAETSPAQPH
0901: IGRSPLSKEV CVIEDDDGAN VPDKVDNMPG TRTFNNLASL EVPSFDLMLE EDNGDMQDVS FPEPAKADCR SATSNTIFDH IRKKSRDFPT LMLSKSMDSS
1001: YEPLILKKMK TSRGQFNLDQ GILHANEVTP MDSEHSELRV SPTNTAEKCR RILSRTSEKS CSLFAEKVYS PFEKSKSLSR IPDENSVQFA DRRGSLSEKS
1101: KSLSRIPDEN SVQFAVRTDS LSEKTKILWT AADENSHQFG GKRDSPSEKS KILMRPPDDG TLQFAGRRGS PSEKSNVLSR TRDENSLQFA AKRDSSSAKS
1201: NVLSKTPDMD SAQFAGRRDN PSEKNKLCSS SPFPDLQATR QAPATVQPLR IQDYCKDILA SSKGSGTGEP FLGFKSVFSF L
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.