Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G159900.1 | Wheat | cytosol | 99.5 | 99.5 |
| TraesCS2A01G154400.1 | Wheat | cytosol | 99.4 | 98.72 |
| HORVU2Hr1G028060.7 | Barley | cytosol | 98.61 | 98.61 |
| Os11t0176200-01 | Rice | nucleus | 91.35 | 91.63 |
| EES02351 | Sorghum | nucleus | 88.47 | 88.65 |
| Zm00001d008777_P008 | Maize | nucleus | 88.27 | 88.27 |
| TraesCS4B01G094600.1 | Wheat | nucleus | 94.53 | 86.77 |
| VIT_11s0065g00340.t01 | Wine grape | cytosol | 78.53 | 79.4 |
| KRH41401 | Soybean | nucleus | 75.25 | 77.56 |
| Solyc05g047520.2.1 | Tomato | nucleus | 71.87 | 77.24 |
| KRH60115 | Soybean | cytosol | 73.86 | 76.84 |
| PGSC0003DMT400035614 | Potato | cytosol | 75.75 | 76.51 |
| Bra029783.1-P | Field mustard | cytosol | 73.86 | 75.51 |
| Solyc12g017860.1.1 | Tomato | nucleus | 70.28 | 75.21 |
| CDY44724 | Canola | cytosol | 73.86 | 75.2 |
| CDY41593 | Canola | cytosol | 74.06 | 75.18 |
| AT2G06990.1 | Thale cress | nucleus | 74.25 | 75.08 |
| PGSC0003DMT400052548 | Potato | cytosol | 72.37 | 74.36 |
| GSMUA_Achr3P05450_001 | Banana | nucleus | 78.73 | 73.33 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 34.39 | 25.29 |
| TraesCS6B01G342300.1 | Wheat | plastid | 23.66 | 19.8 |
| TraesCS6B01G147700.1 | Wheat | cytosol | 2.68 | 15.08 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 13.82 | 10.85 |
| TraesCS6B01G034100.1 | Wheat | cytosol | 17.79 | 8.21 |
| TraesCS7B01G103700.1 | Wheat | cytosol | 17.5 | 8.12 |
| TraesCS4B01G247900.1 | Wheat | mitochondrion, peroxisome | 16.0 | 7.75 |
| TraesCS1B01G336400.1 | Wheat | plastid | 15.01 | 7.25 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 |
| PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF6 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C |
| EnsemblPlantsGene:TraesCS2B01G179600 | EnsemblPlants:TraesCS2B01G179600.1 | TIGR:cd00046 | TIGR:cd00079 | InterPro:rRNA_proc-arch_dom | SEG:seg |
Description
No Description!
Coordinates
chr2B:+:154244923..154253141
Molecular Weight (calculated)
112887.0 Da
IEP (calculated)
6.417
GRAVY (calculated)
-0.276
Length
1006 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEVENSSKR KAPELSSEDN SSAAVLDEQQ SLPGSTAKRP NLARSCIHEV AVPNGYDLSK DEAVHGTLSN PAFNGEMAKT YPFQLDPFQS ISIACLERNE
0101: SVLVSAHTSA GKTAIAEYAI AMSFRDKQRV IYTSPLKALS NQKYRELSQE FSDVGLMTGD VTLQPNATCL VMTTEILRAM LYRGSEVIKE VGWVIFDEIH
0201: YMKDRERGVV WEESIVFLPP AIKMVFLSAT MSNATEFAEW ICNLHKQPCH VVYTDFRPTP LQHYVFPIGG SGLYLVVDEN GQFREDNFLK LQDTFAKQPS
0301: QPDGRKGGGP KASGRIAKGG NASGTSDIYR IVKMIMDRKF QPVIIFSFSR RECEHHAMSM SKLDFNTQEE KDNIEQVFRS AIFCLSEEDR GLPAIELMLP
0401: LLKRGIAVHH SGLLPLIKEL VELLFQEGLV KALFATETFA MGLNMPAKTV VFTSVKKWDG DSNRYIASGE YIQMSGRAGR RGMDARGICV IMIDEKMEMS
0501: VIKDMVLGKP APLISTFRLS YYTILNLLSR AEGQFTAEHV IRNSFHQFQY EKALPEVIQK ITKLENEATL LDSSGENDLA EYHKLGLDIS ELEKKIMSEM
0601: IRPERALLYL VPGRLVKVRD GSTDWGWGVV VNVVKKPPAS STLPPALSAP RNNYIVDTLL HCSSSSSENG ANGPRSKPCP PRQGEKGEMH VVPVPLPLLS
0701: GLSSVRISIP TDLRPPEARQ NILFAVQELG KRYPQGLPKL HPITDMGIEE PELVDLVHKL DGLEQKLCSH PLNKSDQSEQ QLSWYQRKAE LNHEIQQLKS
0801: KMRDSQLQKF RDELKNRSRV LKMLGHIDTD GVLQLKGRAA CLIDTGDELL ITELMFNGTF NELDHHQVAS VVSCFVPCEK SSEQIRLRNE LSKPMMQLSE
0901: AARKIAEVQR ECKLDVNVEE YVESTCKPYL MDVIYCWSKG ATFGEVIEMT DIFEGSIIRL VRRLDEFLNQ LKAAAEAVGE VNLEKKFGLA SESLRRGIMF
1001: ANSLYL
0101: SVLVSAHTSA GKTAIAEYAI AMSFRDKQRV IYTSPLKALS NQKYRELSQE FSDVGLMTGD VTLQPNATCL VMTTEILRAM LYRGSEVIKE VGWVIFDEIH
0201: YMKDRERGVV WEESIVFLPP AIKMVFLSAT MSNATEFAEW ICNLHKQPCH VVYTDFRPTP LQHYVFPIGG SGLYLVVDEN GQFREDNFLK LQDTFAKQPS
0301: QPDGRKGGGP KASGRIAKGG NASGTSDIYR IVKMIMDRKF QPVIIFSFSR RECEHHAMSM SKLDFNTQEE KDNIEQVFRS AIFCLSEEDR GLPAIELMLP
0401: LLKRGIAVHH SGLLPLIKEL VELLFQEGLV KALFATETFA MGLNMPAKTV VFTSVKKWDG DSNRYIASGE YIQMSGRAGR RGMDARGICV IMIDEKMEMS
0501: VIKDMVLGKP APLISTFRLS YYTILNLLSR AEGQFTAEHV IRNSFHQFQY EKALPEVIQK ITKLENEATL LDSSGENDLA EYHKLGLDIS ELEKKIMSEM
0601: IRPERALLYL VPGRLVKVRD GSTDWGWGVV VNVVKKPPAS STLPPALSAP RNNYIVDTLL HCSSSSSENG ANGPRSKPCP PRQGEKGEMH VVPVPLPLLS
0701: GLSSVRISIP TDLRPPEARQ NILFAVQELG KRYPQGLPKL HPITDMGIEE PELVDLVHKL DGLEQKLCSH PLNKSDQSEQ QLSWYQRKAE LNHEIQQLKS
0801: KMRDSQLQKF RDELKNRSRV LKMLGHIDTD GVLQLKGRAA CLIDTGDELL ITELMFNGTF NELDHHQVAS VVSCFVPCEK SSEQIRLRNE LSKPMMQLSE
0901: AARKIAEVQR ECKLDVNVEE YVESTCKPYL MDVIYCWSKG ATFGEVIEMT DIFEGSIIRL VRRLDEFLNQ LKAAAEAVGE VNLEKKFGLA SESLRRGIMF
1001: ANSLYL
001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
Arabidopsis Description
MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.