Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G216300.1 | Wheat | cytosol | 90.33 | 98.61 |
| TraesCS4D01G091400.1 | Wheat | cytosol | 89.78 | 97.23 |
| HORVU4Hr1G018990.9 | Barley | plastid | 90.97 | 96.14 |
| TraesCS2B01G179600.1 | Wheat | cytosol | 86.77 | 94.53 |
| Os11t0176200-01 | Rice | nucleus | 82.76 | 90.43 |
| EES02351 | Sorghum | nucleus | 80.93 | 88.35 |
| Zm00001d008777_P008 | Maize | nucleus | 80.75 | 87.97 |
| VIT_11s0065g00340.t01 | Wine grape | cytosol | 72.17 | 79.5 |
| Solyc05g047520.2.1 | Tomato | nucleus | 66.51 | 77.88 |
| KRH41401 | Soybean | nucleus | 68.8 | 77.25 |
| PGSC0003DMT400035614 | Potato | cytosol | 69.89 | 76.91 |
| KRH60115 | Soybean | cytosol | 67.61 | 76.63 |
| Bra029783.1-P | Field mustard | cytosol | 68.07 | 75.81 |
| CDY44724 | Canola | cytosol | 68.16 | 75.61 |
| CDY41593 | Canola | cytosol | 68.25 | 75.48 |
| AT2G06990.1 | Thale cress | nucleus | 68.52 | 75.48 |
| Solyc12g017860.1.1 | Tomato | nucleus | 64.69 | 75.43 |
| PGSC0003DMT400052548 | Potato | cytosol | 66.79 | 74.77 |
| GSMUA_Achr3P05450_001 | Banana | nucleus | 72.45 | 73.52 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 31.48 | 25.22 |
| TraesCS6B01G342300.1 | Wheat | plastid | 21.62 | 19.72 |
| TraesCS6B01G147700.1 | Wheat | cytosol | 2.55 | 15.64 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 12.68 | 10.85 |
| TraesCS6B01G034100.1 | Wheat | cytosol | 16.15 | 8.12 |
| TraesCS7B01G103700.1 | Wheat | cytosol | 15.69 | 7.93 |
| TraesCS4B01G247900.1 | Wheat | mitochondrion, peroxisome | 14.87 | 7.84 |
| TraesCS1B01G336400.1 | Wheat | plastid | 13.5 | 7.11 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:EF_Hand_1_Ca_BS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 | ScanProsite:PS00018 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR12131 | PANTHER:PTHR12131:SF6 | SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 |
| InterPro:Ski2-like | InterPro:Ski2_C | EnsemblPlantsGene:TraesCS4B01G094600 | EnsemblPlants:TraesCS4B01G094600.1 | TIGR:cd00046 | TIGR:cd00079 |
| TIGR:cd13154 | InterPro:rRNA_proc-arch_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:-:96934732..96942937
Molecular Weight (calculated)
122739.0 Da
IEP (calculated)
7.444
GRAVY (calculated)
-0.260
Length
1096 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVWPKIAVDL FDLGWYFGSE TILGAPRPRR RVRTSEGRVR GVALPATGRS AARPPRSPSS SGLLPAPPPR RTLVAALLLP RRQESVREVL SKKMEVENTS
0101: KRKAPELDLE DSSAAAVLDG QQSLPGSAAK RQNLARSCIH EVAAPNGYDL SMDEAVHGTL SNPVFNGNMA KTYPFQLDPF QSVSIACLER NESVLVSAHT
0201: SAGKTAIAEY AIAMSFRDKQ RVIYTSPLKA LSNQKYRELS HEFSDVGLMT GDVTLQPNAT CLVMTTEILR AMLYRGSEVI KEVGWVIFDE IHYMKDRERG
0301: VVWEESIVFL PPAIKMVFLS ATMSNATEFA EWICNLHKQP CHVVYTDFRP TPLQHYVFPI GGSGLYLVVD ENGQFREDNF LKLQDTFAKQ PSQLDGKKNG
0401: GPKASGRIAK GGNASGTSDI YRIVKMIMER KFQPVIIFSF SRRECEHHAM SMSKLDFNTE EEKDSIEQVF RSAIFCLSEE DRGLPAIELM LPLLKRGIAV
0501: HHSGLLPIIK ELVELLFQEG LVKALFATET FAMGLNMPAK TVVFTSVKKW DGDSNRFIGS GEYIQMSGRA GRRGKDERGI CVIMIDEKME MSVIKDMVLG
0601: KPAPLISTFR LSYYTILNLL SRAEGQFTAE HVIRNSFHQF QYEKALPEVV QKITRLENEA SLLGSSGEND LAEYHKLGLD ISELEKKIMS EMIRPERALL
0701: YLVPGRLVKV RDGSTDWGWG VVVNVVKKPS ASSSLPPALS ASRNNNYIVD TLLHCSSSSS ESGLRSKPCP PRPGEKGEMH VVPVPLPLVC GLSSIRISIP
0801: SDLRPPEARQ NILFAVQELG KRYPQGLPKL HPITDMGIEQ PELVDLVHKL EDLEQKLCSH PLHKSDQSEQ QLSWYQRKAE LNHEIQQLKS KMRDSQLQKF
0901: RDELKNRSRV LKMLGHIDAD GVLQLKGRAA CLIDTGDELL ITELMFNGTF NDLDHHQVAS VVSCFVPCEK SSEQIRLRNE LSKPMMQLQE AARKIAEVQR
1001: ECKLDLNVEE YVESTCKPYL MDVIYCWSKG ATFGEVTEMT DIFEGSIIRL VRRLDEFLNQ LKAAAEAVGE VNLESKFGSA SESLRRGIMF ANSLYL
0101: KRKAPELDLE DSSAAAVLDG QQSLPGSAAK RQNLARSCIH EVAAPNGYDL SMDEAVHGTL SNPVFNGNMA KTYPFQLDPF QSVSIACLER NESVLVSAHT
0201: SAGKTAIAEY AIAMSFRDKQ RVIYTSPLKA LSNQKYRELS HEFSDVGLMT GDVTLQPNAT CLVMTTEILR AMLYRGSEVI KEVGWVIFDE IHYMKDRERG
0301: VVWEESIVFL PPAIKMVFLS ATMSNATEFA EWICNLHKQP CHVVYTDFRP TPLQHYVFPI GGSGLYLVVD ENGQFREDNF LKLQDTFAKQ PSQLDGKKNG
0401: GPKASGRIAK GGNASGTSDI YRIVKMIMER KFQPVIIFSF SRRECEHHAM SMSKLDFNTE EEKDSIEQVF RSAIFCLSEE DRGLPAIELM LPLLKRGIAV
0501: HHSGLLPIIK ELVELLFQEG LVKALFATET FAMGLNMPAK TVVFTSVKKW DGDSNRFIGS GEYIQMSGRA GRRGKDERGI CVIMIDEKME MSVIKDMVLG
0601: KPAPLISTFR LSYYTILNLL SRAEGQFTAE HVIRNSFHQF QYEKALPEVV QKITRLENEA SLLGSSGEND LAEYHKLGLD ISELEKKIMS EMIRPERALL
0701: YLVPGRLVKV RDGSTDWGWG VVVNVVKKPS ASSSLPPALS ASRNNNYIVD TLLHCSSSSS ESGLRSKPCP PRPGEKGEMH VVPVPLPLVC GLSSIRISIP
0801: SDLRPPEARQ NILFAVQELG KRYPQGLPKL HPITDMGIEQ PELVDLVHKL EDLEQKLCSH PLHKSDQSEQ QLSWYQRKAE LNHEIQQLKS KMRDSQLQKF
0901: RDELKNRSRV LKMLGHIDAD GVLQLKGRAA CLIDTGDELL ITELMFNGTF NDLDHHQVAS VVSCFVPCEK SSEQIRLRNE LSKPMMQLQE AARKIAEVQR
1001: ECKLDLNVEE YVESTCKPYL MDVIYCWSKG ATFGEVTEMT DIFEGSIIRL VRRLDEFLNQ LKAAAEAVGE VNLESKFGSA SESLRRGIMF ANSLYL
001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
Arabidopsis Description
HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.