Factsheet for Solyc05g047520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035614	Potato	cytosol	98.93	92.97
Solyc12g017860.1.1	Tomato	nucleus	83.33	82.98
VIT_11s0065g00340.t01	Wine grape	cytosol	85.47	80.4
AT2G06990.1	Thale cress	nucleus	81.41	76.58
Bra029783.1-P	Field mustard	cytosol	79.7	75.81
CDY44724	Canola	cytosol	79.81	75.61
CDY41593	Canola	cytosol	79.91	75.48
TraesCS4A01G216300.1	Wheat	cytosol	78.31	73.01
Os11t0176200-01	Rice	nucleus	77.78	72.58
TraesCS4D01G091400.1	Wheat	cytosol	78.21	72.33
HORVU2Hr1G028060.7	Barley	cytosol	77.56	72.17
Zm00001d008777_P008	Maize	nucleus	77.46	72.07
TraesCS2B01G179600.1	Wheat	cytosol	77.24	71.87
EES02351	Sorghum	nucleus	77.03	71.81
TraesCS2D01G159900.1	Wheat	cytosol	77.03	71.67
TraesCS2A01G154400.1	Wheat	cytosol	77.24	71.37
HORVU4Hr1G018990.9	Barley	plastid	76.6	69.14
TraesCS4B01G094600.1	Wheat	nucleus	77.88	66.51
Solyc01g103080.2.1	Tomato	nucleus	47.65	45.01
Solyc06g005990.2.1	Tomato	cytosol	35.26	24.25
Solyc05g006530.2.1	Tomato	nucleus	25.11	20.36
Solyc02g086580.2.1	Tomato	cytosol	14.42	11.21
Solyc06g071620.2.1	Tomato	nucleus	18.8	8.74
Solyc06g082100.2.1	Tomato	nucleus	17.2	8.19
Solyc08g068120.1.1	Tomato	cytosol, nucleus, plastid	11.97	7.72
Solyc06g069480.2.1	Tomato	nucleus	17.2	7.71
Solyc08g068110.1.1	Tomato	nucleus	4.49	5.96
Solyc06g065300.2.1	Tomato	cytosol	3.53	5.01

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003724
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006401
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K4C0Y6	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF6	SMART:SM00487	SMART:SM00490	SMART:SM01142
SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	EnsemblPlantsGene:Solyc05g047520.2	EnsemblPlants:Solyc05g047520.2.1	UniParc:UPI0002766C99
InterPro:rRNA_proc-arch_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:59005055..59013296

Molecular Weight (calculated)

105253.0 Da

IEP (calculated)

7.047

GRAVY (calculated)

-0.256

Length

936 amino acids

Sequence
(BLAST)

001: MESSPAAVKR KEPEVNSDEK EEVSVACLER NESILVSAHT SAGKTAVAEY AIAMSFRDKQ RVIYTSPLKA LSNQKYRELS HEFSDVGLMT GDVTLSPNAS
101: CLVMTTEILR GMLYRGSEVL KEVAWVIFDE IHYMKDRERG VVWEESIIFL PPAIKMVFLS ATMSNATQFA EWICNIHKQP CHVVYTDFRP TPLQHYMFPM
201: GGSGLYLVID ENEQFREVNF LKMQDSFAKK KVGDGSNNAN ARVRGRIAKG GSTSGGVSDI CKIVKMIMER KFQPVIVFSF SRRECEQHAM SMPKLDFNTE
301: EEKEVVKEVF HNAVDCLSEE DRNLPAIELM LPLLQRGIAV HHSGLLPVIK ELVELLFQEG LIKALFATET FAMGLNMPAK TVVFTSVKKW DGDSHRYIGS
401: GEYIQMSGRA GRRGKDDRGI CIIMIDEKME MDSIKDMVLG KPAPLVSTFR LSYYTILNLL SHAQGQFTAE HVIKHSFHQF QHEKALPDIG KRVSKLEKEA
501: AKLDASGEGE VAEYHKLKLE IVQREKKLMA EITRPERVLH FLLPGRLVKV WEGGKDWGWG VVVNVVKKPP AASGSMPAAL SASRSTGYIV DTLLHCSLGS
601: GENGSQSKPC PPRPGEKGEM HVVPVQLPLI SSLSKLRISV PADLRPLEAR QSILLAVQEL QKRFPQGLPK LNPVKDMGFE DPEFVDIVNQ IEELEKKLFA
701: HPLHKSQDEH QLKSFQKKAE VNHEIQQLKS KMRDSQLQKF RDELKNRSQV LKKLGHIDAD GVVLLKGRAA CLIDTGDELL VTELMLNGTF NDLDHHQTAA
801: LASCFIPGDK TNEQIHLRAE LTKPLQQLQD TARRIAEIQR ECKLEINIEE YVEASVRPFL MDVIYCWSKG ASFAEVIQMT DIFEGSIIRL VRRLDEFLNQ
901: LKGAAHAAGE VDLENKFAAA SESLRRGIMF ANSLYL

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.