Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058295 | Potato | plastid | 97.49 | 97.32 |
| VIT_01s0026g01000.t01 | Wine grape | cytosol | 72.7 | 78.85 |
| KRH74713 | Soybean | nucleus | 71.49 | 71.0 |
| CDY38782 | Canola | plastid | 69.06 | 68.41 |
| Bra016240.1-P | Field mustard | plastid | 68.89 | 68.18 |
| CDY11624 | Canola | plastid | 67.85 | 67.97 |
| AT1G70070.1 | Thale cress | plastid | 68.2 | 67.21 |
| Os02t0739000-01 | Rice | plastid, vacuole | 65.68 | 64.29 |
| TraesCS6D01G291500.1 | Wheat | plastid | 65.34 | 64.01 |
| Zm00001d017982_P001 | Maize | plastid | 64.56 | 63.4 |
| HORVU6Hr1G076860.2 | Barley | plastid | 65.34 | 63.04 |
| TraesCS6B01G342300.1 | Wheat | plastid | 65.51 | 62.9 |
| GSMUA_Achr8P22600_001 | Banana | plastid | 65.42 | 62.6 |
| TraesCS6A01G312100.1 | Wheat | plastid | 65.25 | 62.54 |
| OQU85441 | Sorghum | plastid | 63.95 | 62.02 |
| Solyc05g047520.2.1 | Tomato | nucleus | 20.36 | 25.11 |
| Solyc12g017860.1.1 | Tomato | nucleus | 20.45 | 25.11 |
| Solyc01g103080.2.1 | Tomato | nucleus | 21.4 | 24.92 |
| Solyc06g005990.2.1 | Tomato | cytosol | 22.27 | 18.88 |
| Solyc02g086580.2.1 | Tomato | cytosol | 12.56 | 12.04 |
| Solyc08g068120.1.1 | Tomato | cytosol, nucleus, plastid | 11.09 | 8.82 |
| Solyc06g082100.2.1 | Tomato | nucleus | 14.21 | 8.34 |
| Solyc06g069480.2.1 | Tomato | nucleus | 14.99 | 8.29 |
| Solyc06g071620.2.1 | Tomato | nucleus | 14.12 | 8.09 |
| Solyc08g068110.1.1 | Tomato | nucleus | 3.99 | 6.52 |
| Solyc06g065300.2.1 | Tomato | cytosol | 2.69 | 4.7 |
Protein Annotations
| Gene3D:1.10.3380.30 | MapMan:16.12.2.1.1.3 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000003 |
| GO:GO:0000166 | GO:GO:0000373 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006810 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010497 |
| GO:GO:0010501 | GO:GO:0016441 | GO:GO:0016787 | GO:GO:0040029 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | UniProt:K4BWH9 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF08148 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF360 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2_C | EnsemblPlantsGene:Solyc05g006530.2 | EnsemblPlants:Solyc05g006530.2.1 | UniParc:UPI00027673D8 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:1145002..1155737
Molecular Weight (calculated)
129752.0 Da
IEP (calculated)
5.100
GRAVY (calculated)
-0.288
Length
1154 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTTLPILFAS LSPSNSIASR SPSPFLHIQT LRFCSVKSIQ KNPFTSTSRI FYKFPSSIFP AESQDEDEED DEEDDDDEEA AEEYDEVYAE VSDGDEDSED
0101: ELESSVTDEM LNIEESRRQR VEKLRNEVRE FGDGIIDVNE LASIYTFRID KFQRLSIQAF LRGSSVVVSA PTSSGKTLIA EAAAVATVAR GRRLFYTTPL
0201: KALSNQKFRE FCETFGESNV GLLTGDSAVN RDAQILIMTT EILRNMLYQS VGIASSDGGL LHVDVIVLDE VHYLSDISRG TVWEEIVIYC PKEVQLICLS
0301: ATVANPDELA GWIGQIHGRT ELVTSSKRPV PLTWHFSTKT ALLPLLDDKG TSMNRKLSLN YLQYDESGSE LYREEGSKRR KSRRRENDVR PLSKNDISNI
0401: RRSQVPQIID TLWHLKARDM LPAVWFIFSR KGCDAAVQYL EDCRLLDECE MSEVELALKR FRIQYPDAVR VSAVKGLRRG VAAHHAGCLP LWKSFIEELF
0501: QRGLVKVVFA TETLAAGINM PARTAVISSL SKRGDIGRIQ LSSNELFQMA GRAGRRGIDE KGHVVLVQTP YEGPEECCKV LFSGLQPLVS QFTASYGMVL
0601: NLVAGAKVTR RSTGLDEIKV TRSGRTLEEA RKLIEQSFGN YVGSNVMLAA KEELARIEKE IETLTSEISE EAIAKKSQKL LTQSAYQEIA ELEEELRAEK
0701: RLRTELRRKM ELERVSSLKP LLKEIGDGHL PFMSLHYTNG DGVQHLVAAV YLGKVDTLNT EKLKSMVWDN EAFALKTAVE NFELGDNGGE DVKPSYHVAL
0801: GSDNSWYLFT EKWIRTVYRT GFPNAALTLA DALPREIMAE LLDKAEMQWQ KLAVSELGGL WCMEGSLETW SWSLNVPVLS SLSEDDEVLG LSQAYNDAVE
0901: CYKSQRNKVS RCKKRIARTE GFKQYQKIID SAKFTEEKIR RLKVRSKRLN DRIEQIEPTG WKEFLQVSNV IHESRALDIN THVIFPLGET AAAIRGENEL
1001: WLAMVLRNKL LLNLKPAQLA AVLGSLVSEG IRLRPWKNNS FVYEPSTTVL NIIDLLEEQK SSLLELQEKH GVNIPCCLDS QFTGMVEAWA SGLTWKEIMM
1101: DCAMDEGDLA RLLRRTIDLL AQVPKLPDID PLLQINAKSA SNAMDRPPIS ELAG
0101: ELESSVTDEM LNIEESRRQR VEKLRNEVRE FGDGIIDVNE LASIYTFRID KFQRLSIQAF LRGSSVVVSA PTSSGKTLIA EAAAVATVAR GRRLFYTTPL
0201: KALSNQKFRE FCETFGESNV GLLTGDSAVN RDAQILIMTT EILRNMLYQS VGIASSDGGL LHVDVIVLDE VHYLSDISRG TVWEEIVIYC PKEVQLICLS
0301: ATVANPDELA GWIGQIHGRT ELVTSSKRPV PLTWHFSTKT ALLPLLDDKG TSMNRKLSLN YLQYDESGSE LYREEGSKRR KSRRRENDVR PLSKNDISNI
0401: RRSQVPQIID TLWHLKARDM LPAVWFIFSR KGCDAAVQYL EDCRLLDECE MSEVELALKR FRIQYPDAVR VSAVKGLRRG VAAHHAGCLP LWKSFIEELF
0501: QRGLVKVVFA TETLAAGINM PARTAVISSL SKRGDIGRIQ LSSNELFQMA GRAGRRGIDE KGHVVLVQTP YEGPEECCKV LFSGLQPLVS QFTASYGMVL
0601: NLVAGAKVTR RSTGLDEIKV TRSGRTLEEA RKLIEQSFGN YVGSNVMLAA KEELARIEKE IETLTSEISE EAIAKKSQKL LTQSAYQEIA ELEEELRAEK
0701: RLRTELRRKM ELERVSSLKP LLKEIGDGHL PFMSLHYTNG DGVQHLVAAV YLGKVDTLNT EKLKSMVWDN EAFALKTAVE NFELGDNGGE DVKPSYHVAL
0801: GSDNSWYLFT EKWIRTVYRT GFPNAALTLA DALPREIMAE LLDKAEMQWQ KLAVSELGGL WCMEGSLETW SWSLNVPVLS SLSEDDEVLG LSQAYNDAVE
0901: CYKSQRNKVS RCKKRIARTE GFKQYQKIID SAKFTEEKIR RLKVRSKRLN DRIEQIEPTG WKEFLQVSNV IHESRALDIN THVIFPLGET AAAIRGENEL
1001: WLAMVLRNKL LLNLKPAQLA AVLGSLVSEG IRLRPWKNNS FVYEPSTTVL NIIDLLEEQK SSLLELQEKH GVNIPCCLDS QFTGMVEAWA SGLTWKEIMM
1101: DCAMDEGDLA RLLRRTIDLL AQVPKLPDID PLLQINAKSA SNAMDRPPIS ELAG
0001: MNTLPVVSLT ASSSFKFFHF PSLHRSLSHS PNFSFTKSLI LNPNHLSFKS TLNSLSPSQS QLYEEEDDEE EEEEDEDDDD EAADEYDNIS DEIRNSDDDD
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
Arabidopsis Description
ISE2DExH-box ATP-dependent RNA helicase DExH15 chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.