Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 4.92 | 89.33 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 62.16 | 77.4 |
| KRG98348 | Soybean | cytosol | 71.42 | 72.43 |
| CDX99082 | Canola | cytosol | 62.16 | 70.8 |
| AT3G46960.1 | Thale cress | nucleus | 69.8 | 70.53 |
| GSMUA_Achr9P03710_001 | Banana | cytosol | 68.33 | 70.51 |
| Bra018181.1-P | Field mustard | nucleus | 68.85 | 69.87 |
| CDX86107 | Canola | nucleus | 68.7 | 69.52 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 62.89 | 62.62 |
| HORVU6Hr1G025670.1 | Barley | nucleus | 62.6 | 62.33 |
| KXG29518 | Sorghum | cytosol | 62.53 | 62.07 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 62.38 | 62.06 |
| Zm00001d015314_P003 | Maize | cytosol | 62.82 | 60.55 |
| Solyc05g047520.2.1 | Tomato | nucleus | 24.25 | 35.26 |
| Solyc12g017860.1.1 | Tomato | nucleus | 24.1 | 34.89 |
| Solyc01g103080.2.1 | Tomato | nucleus | 25.13 | 34.51 |
| Solyc05g006530.2.1 | Tomato | nucleus | 18.88 | 22.27 |
| Solyc02g086580.2.1 | Tomato | cytosol | 10.95 | 12.38 |
| Solyc06g082100.2.1 | Tomato | nucleus | 14.92 | 10.33 |
| Solyc06g071620.2.1 | Tomato | nucleus | 14.62 | 9.88 |
| Solyc06g069480.2.1 | Tomato | nucleus | 14.03 | 9.15 |
| Solyc08g068110.1.1 | Tomato | nucleus | 4.56 | 8.79 |
| Solyc08g068120.1.1 | Tomato | cytosol, nucleus, plastid | 9.04 | 8.48 |
| Solyc06g065300.2.1 | Tomato | cytosol | 2.35 | 4.86 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.6.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 |
| GO:GO:0003824 | GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0006810 |
| GO:GO:0006813 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016441 |
| GO:GO:0016787 | GO:GO:0035864 | GO:GO:0040029 | GO:GO:0055087 | GO:GO:0070478 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:K4C381 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR12131 | PANTHER:PTHR12131:SF8 | SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 |
| InterPro:Ski2-like | InterPro:Ski2_C | EnsemblPlantsGene:Solyc06g005990.2 | EnsemblPlants:Solyc06g005990.2.1 | UniParc:UPI0002765F29 | InterPro:rRNA_proc-arch_dom |
| SEG:seg | : | : | : | : | : |
Description
DExH-box ATP-dependent RNA helicase DExH11 [Source:Projected from Arabidopsis thaliana (AT3G46960) UniProtKB/Swiss-Prot;Acc:F4JAA5]
Coordinates
chr6:+:983484..1006865
Molecular Weight (calculated)
152651.0 Da
IEP (calculated)
6.015
GRAVY (calculated)
-0.353
Length
1361 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDRLVAAKEL SFRIGFTGHS GHLTIEPLPP VERDTPLNSI PDFILPPAFP KETPDTIKEY IREKYLLPQL DADEFSPEKV GRQWEFDWFE RAKILPDPSL
0101: PRSVVVPTWE VPFRRQRDRL DNGRWEPKSE ERDVSELTIG ADDSGALPRI VGPPKDFVRG SINSRPFRPG GLDDSPSLGR VVPDGATNGE WVREVLNGGP
0201: AQTAPPSFKQ GPDLGDLKDT HSCSWNIYED QSAATNTVEV KLSDLSVQFD DLFKKAWQED VTEFVGDGHT SELQSEAEQL PSVKPELLQV EAEVNKSEVA
0301: DKGLDTEISV LDEILSVEAE GSISRLDVDN DGARQENDGW AVTGGGEVIV ERFHDLIPDM ALTFPFELDP FQKEAIYHLE KGNSVFVAAH TSAGKTVVAE
0401: YAFALAAKHC TRAVYTAPIK TISNQKYRDF CGKFDVGLLT GDISIRPEAS CLIMTTEILR SMLYRGADMI RDIEWVIFDE VHYVNDVERG VVWEEVIIML
0501: PRHINFVLLS ATVPNTIEFA DWIGRTKQKQ IRVTGTTKRP VPLEHCLFYS GELYKVCENE EFLPHGFRAA KDVHKKKTTS SVSGGAGLRP GSSTAADKGR
0601: GQRRDSSSQA KQHKHSGPQR LGNFGGGWGT QSTGPGQNVM GFRRSEASLW LTLINKLLKK SLLPVVIFCF SKNRCDKSAD NIPGTDLTSS SEKSEIRIFC
0701: DKAFSRLKGS DRNLPQIVRI QSLLHRGIAV HHAGLLPIVK EVVEMLFCRG LVKVLFSTET FAMGVNAPAR TVVFDSLRKF DGKEFRQLLP GEYTQMAGRA
0801: GRRGLDKTGT VVVMCRDEIP FENDLKHVIV GTATRLESQF RLTYIMILHL LRVEELKVED MLKRSFAEFH AQKKLPEQQQ LLMRKLAQPT KSVECIKGEP
0901: AIEEYYDMYL EAEKYSHQIA EAVMQSPASQ QYLSLGRAVV VKSQSAQDHL LGVVVKTPSS NNRQYIVLVL TPELPSTLET SSDRSNRKDQ KNSEMQILLP
1001: KSRRGYDDEY CSSVTSRKGS GAVNIKLPHR GNAAGMNYEV RGVDNKDFLY ICVKKIKIDQ VRLLEDVSAG AYSNAIQQLL SLKSEGNKYP PALDPVKDLK
1101: LKDMNLVEAY YKWNNLLQKM AQNKCHGCIK LDEHMKLAKE LELHRAEVNA LRFEMSDEAL QQMPDFQGRI DVLKEIGCID ADLVVQIKGR VACEMNSVEE
1201: LICTECLFEN QLDDLEPEEA VAIMSSFVFQ QKETSESFLT PKLSQAKKRL HETAIRLGEL QAQFKLPIDP KEYAQENLKF GLVEVVYEWA KGTPFAEICE
1301: LTDVPEGVIV RTIVRLDETC REFRNAAAIM GNSALYKKME TASNVIKRDI VFAASLYITG V
0101: PRSVVVPTWE VPFRRQRDRL DNGRWEPKSE ERDVSELTIG ADDSGALPRI VGPPKDFVRG SINSRPFRPG GLDDSPSLGR VVPDGATNGE WVREVLNGGP
0201: AQTAPPSFKQ GPDLGDLKDT HSCSWNIYED QSAATNTVEV KLSDLSVQFD DLFKKAWQED VTEFVGDGHT SELQSEAEQL PSVKPELLQV EAEVNKSEVA
0301: DKGLDTEISV LDEILSVEAE GSISRLDVDN DGARQENDGW AVTGGGEVIV ERFHDLIPDM ALTFPFELDP FQKEAIYHLE KGNSVFVAAH TSAGKTVVAE
0401: YAFALAAKHC TRAVYTAPIK TISNQKYRDF CGKFDVGLLT GDISIRPEAS CLIMTTEILR SMLYRGADMI RDIEWVIFDE VHYVNDVERG VVWEEVIIML
0501: PRHINFVLLS ATVPNTIEFA DWIGRTKQKQ IRVTGTTKRP VPLEHCLFYS GELYKVCENE EFLPHGFRAA KDVHKKKTTS SVSGGAGLRP GSSTAADKGR
0601: GQRRDSSSQA KQHKHSGPQR LGNFGGGWGT QSTGPGQNVM GFRRSEASLW LTLINKLLKK SLLPVVIFCF SKNRCDKSAD NIPGTDLTSS SEKSEIRIFC
0701: DKAFSRLKGS DRNLPQIVRI QSLLHRGIAV HHAGLLPIVK EVVEMLFCRG LVKVLFSTET FAMGVNAPAR TVVFDSLRKF DGKEFRQLLP GEYTQMAGRA
0801: GRRGLDKTGT VVVMCRDEIP FENDLKHVIV GTATRLESQF RLTYIMILHL LRVEELKVED MLKRSFAEFH AQKKLPEQQQ LLMRKLAQPT KSVECIKGEP
0901: AIEEYYDMYL EAEKYSHQIA EAVMQSPASQ QYLSLGRAVV VKSQSAQDHL LGVVVKTPSS NNRQYIVLVL TPELPSTLET SSDRSNRKDQ KNSEMQILLP
1001: KSRRGYDDEY CSSVTSRKGS GAVNIKLPHR GNAAGMNYEV RGVDNKDFLY ICVKKIKIDQ VRLLEDVSAG AYSNAIQQLL SLKSEGNKYP PALDPVKDLK
1101: LKDMNLVEAY YKWNNLLQKM AQNKCHGCIK LDEHMKLAKE LELHRAEVNA LRFEMSDEAL QQMPDFQGRI DVLKEIGCID ADLVVQIKGR VACEMNSVEE
1201: LICTECLFEN QLDDLEPEEA VAIMSSFVFQ QKETSESFLT PKLSQAKKRL HETAIRLGEL QAQFKLPIDP KEYAQENLKF GLVEVVYEWA KGTPFAEICE
1301: LTDVPEGVIV RTIVRLDETC REFRNAAAIM GNSALYKKME TASNVIKRDI VFAASLYITG V
0001: MNKVEAGNEL GFRVGFSGHG GHLRVEPFYT AERDDALNSL PDFVSPPAFA KETKESIKKH IEEKYLIPRL EPDQFSAEKA ENQWDFDWFS RVKMPLQPSL
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
Arabidopsis Description
SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.