Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015314_P003 | Maize | cytosol | 93.51 | 90.79 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 83.52 | 83.76 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 83.37 | 83.55 |
| HORVU6Hr1G025670.1 | Barley | nucleus | 82.71 | 82.96 |
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 4.08 | 74.67 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 54.92 | 68.89 |
| GSMUA_Achr9P03710_001 | Banana | cytosol | 66.23 | 68.84 |
| CDX99082 | Canola | cytosol | 56.82 | 65.19 |
| KRG98348 | Soybean | cytosol | 63.17 | 64.53 |
| Bra018181.1-P | Field mustard | nucleus | 61.93 | 63.31 |
| AT3G46960.1 | Thale cress | nucleus | 62.07 | 63.18 |
| CDX86107 | Canola | nucleus | 61.93 | 63.12 |
| Solyc06g005990.2.1 | Tomato | cytosol | 62.07 | 62.53 |
| EES02351 | Sorghum | nucleus | 25.97 | 35.46 |
| EER87693 | Sorghum | cytosol | 25.31 | 34.67 |
| OQU85441 | Sorghum | plastid | 17.43 | 20.08 |
| OQU85316 | Sorghum | nucleus | 10.5 | 11.12 |
| EER99779 | Sorghum | cytosol | 15.75 | 9.9 |
| EES04337 | Sorghum | cytosol | 15.54 | 9.8 |
| KXG39883 | Sorghum | mitochondrion | 14.73 | 9.69 |
| KXG37223 | Sorghum | cytosol | 15.39 | 9.57 |
| OQU79067 | Sorghum | plastid | 13.13 | 8.66 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.6.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | UniProt:A0A194YMR2 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0006810 |
| GO:GO:0006813 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016441 |
| GO:GO:0016787 | GO:GO:0035864 | GO:GO:0040029 | GO:GO:0055087 | GO:GO:0070478 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | EnsemblPlants:KXG29518 | ProteinID:KXG29518 | ProteinID:KXG29518.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF8 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01142 | EnsemblPlantsGene:SORBI_3004G048800 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C | UniParc:UPI0007F263EB |
| InterPro:rRNA_proc-arch_dom | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:3935039..3947616
Molecular Weight (calculated)
153441.0 Da
IEP (calculated)
6.082
GRAVY (calculated)
-0.350
Length
1371 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGPATSPAS EVPFRISFSG HGGHLRLDPT PHTHSLIPDF VLPPAYPAES PSSVKEYLER NYLNPELHLP TAADSGRVWD VDWFALARPP LEPSAPRTTL
0101: APAWVPPFRR GRQKLQSASE SQVWDPESVQ MEMVDVFGSG TGGIAPRMPG PAKDFVRGSI NNRPFRPGGL QDDTAEAAAL EKAFPEGARN GDWVRELMSG
0201: GPAQVAPPGF RKGLELGQLK EYKSHWKCFR DGELVEEQPA SSSNDTMEKY SVQFDDLFKI AWEEDAANKL LQEGVVQQSA ESEGINEIGK QKVALQDASE
0301: TIITLDAKKQ EADVIRDVPE TQTDLDQMLS SEVQAAAGRE PGVSGDEKPT QDGMVWALVG GDEDIVTNFY KLVPDMAIEF PFELDKFQKE AIYYLEKGES
0401: VFVAAHTSAG KTVVAEYAFA LATKHCTRAV YTAPIKTISN QKYRDFSGKF DVGLLTGDVS IRPEATCLIM TTEILRSMLY RGADIIRDIE WVIFDEVHYV
0501: NDAERGVVWE EVIIMLPKHI NIVLLSATVP NTVEFADWIG RTKQKKIRVT STNKRPVPLE HCLFYSGEVY KICERDMFLT QGFKEAKDAF KKKNSNKFGV
0601: KPGPRSGTPA VRAGTQGKNP DTSNKGRDQK YPKHHNSNSG AATVQQSSSG PKRFETLFWM PLVNNLLKKS LVPVVIFCFS KNRCDKSADS MFGADLTSSS
0701: EKSEIRVFCD KAFSRLKGSD RNLPQVVGIQ SLLRRGIGVH HAGLLPIVKE VVEMLFCRGV IKVLFSTETF AMGVNAPART VVFDSLRKFD GKEHRKLLPG
0801: EYIQMAGRAG RRGLDNIGTV IIMCRDEIPE ESDLKNLIVG KPTRLESQFR LTYTMILHLL RVEELKVEDM LKRSFAEFHA QKNLPEKEKL LLQMLRQPTR
0901: TIECIKGEPS IEEYYEVALE AEKHRESITQ AIMQLPNSQQ FLTPGRLVVV KSDCDDDHLL GVILKNPSPM LKKYVVLVLT GDCSSSVLAP EFNKNEKGPG
1001: DFQGGQFIAL KGKRGMDDEY YSSVISRKGS GVITIKLPYK GDASGMGFEV RAIENKEIMI ICTSKIKVDQ VRLLEDPNKI TYSRTVQQLM KEQPDGTKFP
1101: PALDAIKDLK MKDMDLVESY HAYHRLLQKM SENKCHGCIK LKEHISLMKE EKMYKDELSK LKFQMSDEAL KQMPEFQGRI ELLKIIEYID SDLVVQLKGR
1201: VACEMNSGEE LISTECLFEN QLDDLEPEEA VAIMSAFVFQ QRNASEPSLT PKLAEAKKRL YDTAIELGKL QADLQVPVDP EEYARDNLKF GLVEVVYEWA
1301: KGTPFSDICE LTDVSEGIIV RTIVRLDETC REFRNAASIM GNSALFKKME IASNAIKRDI VFAASLYVTG I
0101: APAWVPPFRR GRQKLQSASE SQVWDPESVQ MEMVDVFGSG TGGIAPRMPG PAKDFVRGSI NNRPFRPGGL QDDTAEAAAL EKAFPEGARN GDWVRELMSG
0201: GPAQVAPPGF RKGLELGQLK EYKSHWKCFR DGELVEEQPA SSSNDTMEKY SVQFDDLFKI AWEEDAANKL LQEGVVQQSA ESEGINEIGK QKVALQDASE
0301: TIITLDAKKQ EADVIRDVPE TQTDLDQMLS SEVQAAAGRE PGVSGDEKPT QDGMVWALVG GDEDIVTNFY KLVPDMAIEF PFELDKFQKE AIYYLEKGES
0401: VFVAAHTSAG KTVVAEYAFA LATKHCTRAV YTAPIKTISN QKYRDFSGKF DVGLLTGDVS IRPEATCLIM TTEILRSMLY RGADIIRDIE WVIFDEVHYV
0501: NDAERGVVWE EVIIMLPKHI NIVLLSATVP NTVEFADWIG RTKQKKIRVT STNKRPVPLE HCLFYSGEVY KICERDMFLT QGFKEAKDAF KKKNSNKFGV
0601: KPGPRSGTPA VRAGTQGKNP DTSNKGRDQK YPKHHNSNSG AATVQQSSSG PKRFETLFWM PLVNNLLKKS LVPVVIFCFS KNRCDKSADS MFGADLTSSS
0701: EKSEIRVFCD KAFSRLKGSD RNLPQVVGIQ SLLRRGIGVH HAGLLPIVKE VVEMLFCRGV IKVLFSTETF AMGVNAPART VVFDSLRKFD GKEHRKLLPG
0801: EYIQMAGRAG RRGLDNIGTV IIMCRDEIPE ESDLKNLIVG KPTRLESQFR LTYTMILHLL RVEELKVEDM LKRSFAEFHA QKNLPEKEKL LLQMLRQPTR
0901: TIECIKGEPS IEEYYEVALE AEKHRESITQ AIMQLPNSQQ FLTPGRLVVV KSDCDDDHLL GVILKNPSPM LKKYVVLVLT GDCSSSVLAP EFNKNEKGPG
1001: DFQGGQFIAL KGKRGMDDEY YSSVISRKGS GVITIKLPYK GDASGMGFEV RAIENKEIMI ICTSKIKVDQ VRLLEDPNKI TYSRTVQQLM KEQPDGTKFP
1101: PALDAIKDLK MKDMDLVESY HAYHRLLQKM SENKCHGCIK LKEHISLMKE EKMYKDELSK LKFQMSDEAL KQMPEFQGRI ELLKIIEYID SDLVVQLKGR
1201: VACEMNSGEE LISTECLFEN QLDDLEPEEA VAIMSAFVFQ QRNASEPSLT PKLAEAKKRL YDTAIELGKL QADLQVPVDP EEYARDNLKF GLVEVVYEWA
1301: KGTPFSDICE LTDVSEGIIV RTIVRLDETC REFRNAASIM GNSALFKKME IASNAIKRDI VFAASLYVTG I
0001: MNKVEAGNEL GFRVGFSGHG GHLRVEPFYT AERDDALNSL PDFVSPPAFA KETKESIKKH IEEKYLIPRL EPDQFSAEKA ENQWDFDWFS RVKMPLQPSL
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
Arabidopsis Description
SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.