CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023796_P033	Maize	nucleus, plastid	92.4	91.69
HORVU1Hr1G065680.1	Barley	nucleus	62.46	76.62
Os12t0291000-00	Rice	nucleus	75.36	76.35
PGSC0003DMT400037575	Potato	cytosol, extracellular	5.77	75.0
TraesCS1A01G323500.1	Wheat	plastid	73.24	73.78
TraesCS1D01G324400.1	Wheat	plastid	73.2	73.73
TraesCS1B01G336400.1	Wheat	plastid	73.82	73.68
HORVU0Hr1G026710.1	Barley	plastid	68.09	73.39
CDY51661	Canola	nucleus	47.83	63.88
Solyc08g068120.1.1	Tomato	cytosol, nucleus, plastid	42.11	60.3
GSMUA_Achr11P...	Banana	nucleus	56.93	57.91
VIT_04s0008g03960.t01	Wine grape	nucleus	55.44	53.38
CDY23339	Canola	nucleus	51.49	53.21
KRH16213	Soybean	nucleus	54.04	52.31
Bra040938.1-P	Field mustard	nucleus	53.46	52.23
AT4G32700.2	Thale cress	nucleus	53.9	52.0
Bra011372.1-P	Field mustard	nucleus	53.9	48.72
CDY51662	Canola	nucleus	16.02	43.36
Solyc08g068110.1.1	Tomato	nucleus	12.95	38.16
OQU85316	Sorghum	nucleus	10.39	16.68
EER87693	Sorghum	cytosol	7.22	14.98
EES02351	Sorghum	nucleus	7.12	14.74
OQU85441	Sorghum	plastid	7.94	13.87
EER99779	Sorghum	cytosol	13.91	13.24
EES04337	Sorghum	cytosol	13.76	13.16
KXG29518	Sorghum	cytosol	8.66	13.13
KXG37223	Sorghum	cytosol	13.43	12.66
KXG39883	Sorghum	mitochondrion	11.6	11.56

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	Gene3D:1.10.3380.20	Gene3D:1.20.1060.10	MapMan:14.2.2
Gene3D:3.30.70.370	Gene3D:3.40.50.300	UniProt:A0A1Z5R5S4	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA-dir_DNA_pol_A_palm_dom	InterPro:DNA_polymerase_A
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261
GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009640	GO:GO:0009653	GO:GO:0009791	GO:GO:0009933	GO:GO:0009987	GO:GO:0010468
GO:GO:0016740	GO:GO:0051301	GO:GO:0071897	GO:GO:1902749	GO:GO:1990067	GO:GO:2000011
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:OQU79067	ProteinID:OQU79067
ProteinID:OQU79067.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00476	PRINTS:PR00868
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10133	PANTHER:PTHR10133:SF27	SMART:SM00482	SMART:SM00487
SMART:SM00490	EnsemblPlantsGene:SORBI_3008G091300	SUPFAM:SSF158702	SUPFAM:SSF52540	SUPFAM:SSF56672	UniParc:UPI000B8BA7A8
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:37877921..37942781

Molecular Weight (calculated)

229294.0 Da

IEP (calculated)

7.885

GRAVY (calculated)

-0.267

Length

2078 amino acids

Sequence
(BLAST)

0001: MASGSSRPQI DQFFPAKKRR PSSRKDGSPR PGTQHESPGG AKGSLEGYLA RSLSTRAAAA ASVLPVRSPS GGDPGARRSL SAAMDVDVGS SAPVVAVVGD
0101: GADFDLRRST ADFLSHSCSE QWGMKQKRSA TQSFLIPCDN DCVKKQRVAH CGGLEAPKEL DDNVASMKQC INHHGGSEAV EESFEGEQVS CVGFSALQRC
0201: SFTPSTAQRK VGFSLAPVET LKSVSRNSLT SPGEEFWNAA IELADGISAQ ADKVRGRPEF DAAEDKSSCA VAVCSKTLCR SERDELDCQN TVGSNDTHHM
0301: EKLSNKVESL AVNSQHIINS PLPVKQLDFF HEDDIKVSCS KFEAKGSCEA CSAQADHVTL KDSGLLGKEN LIDPVDVMKK SASNLHTDSA AMTMRCQGVF
0401: KSTIEGNVHP TQEDARDSHL ISRDLNQPTH NKNKSLAAYS NNCKTWVDSK SKFASEEVEA RTPSSSIPLK DQSKLSSWLP PELCAMYMKK GISELYPWQV
0501: ECLLVEGVLD KRNLVYCAST SAGKSFVAEV LMLRRILSSG NVAILVLPYV SICAEKAEHL EQLLEPLGRH VRSFYGNQGG GSLPKDTAVA VCTIEKANSL
0601: VNKLLEDGRL SELGVIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGTSQ SSSGEISGSS SGKMASHGLQ IIGMSATMPN IAAVADWLQA ALYQTDFRPV
0701: PLEEFIKVGN QIFDKDMNVV RVLPKVADHG GKDPDHIVEL CNEVVLQGHS VLLFCSSRKG CESTARHVAK FLKLSSVGSS DVSSEFSDAA AAIEALRRCP
0801: AGLDPILGET LPFGVAYHHA GLTVEEREIV ESCYRKGLVR VLTATSTLAA GVNLPARRVI FRQPKIGRDF IDGTRYRQMA GRAGRTGIDT KGESILVCRL
0901: EEVKRITGII RSNCPPLESC LSEDKNGMTH AIMEVVAGGI VQTANDIHRY VRCTLLNSTR PFDDVVKSAQ DSLRWLCHKR FLDWNHETKI YSATPLGRAA
1001: FGSSLNPEES LVVLDDLSRA REGFVLASDL HLVYLVTPIN VGLEPDWELY YERFMQLTSL EQSVGNRVGV IEPFLMHMAH GASMPVCGRP QRNTGLSNKS
1101: AQAGGNALVS EHTLRVSKRF YVALMLSRLA QEIPIADVCE TFKVARGMIQ ALQENAGRFA SMVSAFCQRL GWNDLEGLVS KFQNRVSFGV RAEIAELTSI
1201: PFVKGSRARA LYKSGLRTPV AIAEASIPEI AKALFESSAW SGQDSGLQRM QFGIAKKIKN GARKIVLEEA EAARVAAFSA FKSLGVEVPQ FTAPPLAAVE
1301: DYPTRDTIDQ AKSNKLAFGT HARDDKNKNS CSDYATPRGS TYSLRKDANP APSIQMRENA GLSKNVKITR QGGASSLSTE IADGLSSRDV ADRGPVQAYN
1401: FPGGFDCFLD QWSAASHFFF DVHFIRRSLK PSSNLFEVFG LAVCWENSPI YYCNFPKDLV TTSNNDFREM WGNFQRRWEK ITDIMQQKSV QKMTWNLKIQ
1501: IQALKSPYIS CQRLERFHLD HKMLDKVEVL DNSYVLLSPV SVYNGLDICL LAWVLWPDEE SRTVPNLEKF VKRRLHSEAA AAANRDGRWR NQMHKAAHNG
1601: CCRRSAQTRA LYTVLKKLLT QNLSDLVETI EAPLVNVLAD MELWGIGADM DACLHARHII TKKLKELEKE AYRLAGKNFS LNATADIADI LYVHLKLPVP
1701: KGCEKGKLHP STDKQSLDHL RDQHPIIPVI KEHRTLAKLL NGTLWSICSR AQLCTQSQRY IIHGNWLQTS TATGRLSMEE PNLQCVEHLV EFDTGKSNKD
1801: YCMSVDDHHK INVRDFFIPT KENWLFVTAD YSQIELRLMA HFSKDPTLVE LLSKPDGDVF TMIASRWADK EEALISSKER ENTKRLIYGI LYGMGANSLA
1901: EQLECSTEDA AQKIQSFRRL FPGVSSWLHE VVLSCRQKGY VETLLGRRRF LTKITAGNSK EKAKAQRQAV NSICQGSAAD IIKVAMIRLH SVITNRTRAT
2001: DSTDEVTRKF SEFGGQCHLI LQVHDELVLE VVPCMVAQAG RLLQICMEEA ASLLVPLRTK IKVGKTWGSL EPFYPEPC

Best Arabidopsis Sequence Match ( AT4G32700.2 )
(BLAST)

0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD

Arabidopsis Description

TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.