Factsheet for Bra029783.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44724	Canola	cytosol	99.9	99.49
AT2G06990.1	Thale cress	nucleus	91.56	90.55
VIT_11s0065g00340.t01	Wine grape	cytosol	82.83	81.91
KRH41401	Soybean	nucleus	80.49	81.15
KRH60115	Soybean	cytosol	79.37	80.77
Solyc05g047520.2.1	Tomato	nucleus	75.81	79.7
PGSC0003DMT400035614	Potato	cytosol	79.88	78.92
Solyc12g017860.1.1	Tomato	nucleus	74.19	77.66
PGSC0003DMT400052548	Potato	cytosol	76.63	77.02
EES02351	Sorghum	nucleus	76.32	74.8
TraesCS4A01G216300.1	Wheat	cytosol	76.02	74.5
Zm00001d008777_P008	Maize	nucleus	76.02	74.35
Os11t0176200-01	Rice	nucleus	75.61	74.18
TraesCS4D01G091400.1	Wheat	cytosol	76.22	74.11
HORVU2Hr1G028060.7	Barley	cytosol	75.71	74.06
TraesCS2D01G159900.1	Wheat	cytosol	75.51	73.86
TraesCS2B01G179600.1	Wheat	cytosol	75.51	73.86
TraesCS2A01G154400.1	Wheat	cytosol	75.51	73.35
HORVU4Hr1G018990.9	Barley	plastid	74.7	70.88
GSMUA_Achr3P05450_001	Banana	nucleus	76.52	69.72
TraesCS4B01G094600.1	Wheat	nucleus	75.81	68.07
Bra035425.1-P	Field mustard	nucleus	20.83	54.23
Bra027835.1-P	Field mustard	nucleus	45.94	47.28
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	26.63	42.26
Bra018181.1-P	Field mustard	nucleus	34.55	25.35
Bra016240.1-P	Field mustard	plastid	23.48	19.81
Bra008413.1-P	Field mustard	cytosol	12.6	13.25
Bra033025.1-P	Field mustard	nucleus	11.99	10.79
Bra020835.1-P	Field mustard	cytosol	17.89	8.43
Bra022718.1-P	Field mustard	cytosol	18.09	8.14
Bra012260.1-P	Field mustard	cytosol	17.99	8.1
Bra029333.1-P	Field mustard	plastid	15.45	7.13
Bra040938.1-P	Field mustard	nucleus	15.04	6.96
Bra011372.1-P	Field mustard	nucleus	15.24	6.52

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra029783
EnsemblPlants:Bra029783.1	EnsemblPlants:Bra029783.1-P	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006397	GO:GO:0006401	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010093	GO:GO:0016607	GO:GO:0016787	GO:GO:0040029	GO:GO:0060149
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4ELW3	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF6	SMART:SM00487	SMART:SM00490	SMART:SM01142
SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI0002547B30	InterPro:rRNA_proc-arch_dom	SEG:seg

Description

AT2G06990 (E=0.0) HEN2 | HEN2 (hua enhancer 2); ATP-dependent helicase/ RNA helicase

Coordinates

chrA05:-:22283102..22287552

Molecular Weight (calculated)

110520.0 Da

IEP (calculated)

6.547

GRAVY (calculated)

-0.305

Length

984 amino acids

Sequence
(BLAST)

001: MESPETLGKR KASSDETPTP EPTTKRRSSQ KRACVHEVAV PNGYTPSKEE AIHGTLDNPL YNGDMAKTYP FQLDPFQSIS VACLERKESI LVSAHTSAGK
101: TAVAEYAIAM AFRDKQRVIY TSPLKALSNQ KYRELQHEFH DVGLMTGDVT ISPNASCLVM TTEILRAMLY RGSEVLKEVA WVIFDEIHYM KDRERGVVWE
201: ESIIFLPPAI KMVFLSATMS NATEFAEWIC YLHKQPCHVV YTDFRPTPLQ HYAFPMGGSG LYLVVDENEQ FREANFIKMH DTFPKPKSEG KKSANGKSGG
301: RGGAKGGGGG GGDSDVYKIV KMIMERKFQP VIIFSFSRRE CENHALSMSK LDFNTDEEKS TVEEVFNNAM LCLNEEDRSL SAIEMMLPLL QRGIAVHHSG
401: LLPVLKELVE LLFQEGLVKA LFATETFAMG LNMPAKTVVF TAVKKWDGDS HRFIGSGEYI QMSGRAGRRG KDERGICIIM IDEQMEMDVL KDMMLGKPAP
501: LLSTFRLSYY TILNLLSRAE GQFTAEHVIK HSFHQFQYEK ALPDIENKVT KLEEEAAILD ASGKAEVAEY HKLKLDIAPL EKKLMSEIIR PERVLCFLDT
601: GRLVKIREGG TDWGWGVVVN VVKKTSVGTS SQGGGYIVDT LLHCSTGVSE NGAKPKPCPP RPGEKGEMHV VPVQLPLITA LSRLRISVPS DLRPLEARQS
701: ILLAVQELSS RFPLGFPKLH PVKDMNIQDT EIVELVSQIE EAEQKLLAHP MHKSEDDQQM KSFQRKAEVN YEIQQFKSKM RDSQLQKFRD ELRNRSRVLK
801: KLGHIDADGV VQLKGRAACL IDTGDELLVT ELMFNGTFND LDHHQVAALA SCFIPVDKSN EKVELKNELN RPLQQLKDSA RRIAEIQHEC KLEIDVEEYV
901: ESTIREGLMD VIYCWSTGST FAEVMNKTDI FEGSIIRSAR RLDEFLNQLR LAAEAVGENN LASKFAAASE SLRRGIMFAN SLYL

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.