Factsheet for Bra027835.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45148	Canola	endoplasmic reticulum	64.02	98.39
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	62.45	96.29
CDY30903	Canola	nucleus	98.43	95.34
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	94.25	91.19
CDY45149	Canola	nucleus	35.46	89.68
Bra035425.1-P	Field mustard	nucleus	34.73	87.83
CDY33604	Canola	cytosol	24.37	79.25
VIT_06s0009g01750.t01	Wine grape	cytosol	79.5	76.23
KRH46878	Soybean	nucleus	77.72	75.74
PGSC0003DMT400053368	Potato	nucleus	77.09	74.29
Solyc01g103080.2.1	Tomato	nucleus	76.99	74.27
TraesCS7D01G010500.1	Wheat	cytosol	76.36	73.89
EER87693	Sorghum	cytosol	77.3	73.83
TraesCS4A01G484300.2	Wheat	cytosol	76.57	73.57
Os12t0279000-01	Rice	mitochondrion	59.52	73.32
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	76.57	73.2
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	76.78	72.53
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	75.63	69.45
TraesCS7A01G010800.1	Wheat	cytosol	75.84	68.08
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	16.11	52.74
HORVU1Hr1G048420.1	Barley	cytosol	4.39	51.22
Bra029783.1-P	Field mustard	cytosol	47.28	45.94
Bra018181.1-P	Field mustard	nucleus	35.15	25.06
Bra016240.1-P	Field mustard	plastid	24.16	19.81
Bra008413.1-P	Field mustard	cytosol	12.34	12.61
Bra033025.1-P	Field mustard	nucleus	13.39	11.7
Bra020835.1-P	Field mustard	cytosol	18.83	8.62
Bra012260.1-P	Field mustard	cytosol	18.72	8.19
Bra022718.1-P	Field mustard	cytosol	18.72	8.18
Bra029333.1-P	Field mustard	plastid	17.15	7.69
Bra040938.1-P	Field mustard	nucleus	15.59	7.01
Bra011372.1-P	Field mustard	nucleus	15.79	6.57

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra027835
EnsemblPlants:Bra027835.1	EnsemblPlants:Bra027835.1-P	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006401	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4EGC1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF7	SMART:SM00487	SMART:SM00490
SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI0002542754	InterPro:rRNA_proc-arch_dom

Description

AT1G59760 (E=0.0) | ATP-dependent RNA helicase, putative

Coordinates

chrA09:+:9088650..9093767

Molecular Weight (calculated)

108393.0 Da

IEP (calculated)

6.832

GRAVY (calculated)

-0.286

Length

956 amino acids

Sequence
(BLAST)

001: MGSVKRKSVE ESSDCAPPQK IQREDDDSTQ IINEELVGCV HDVSFPENYL PPAPSSQENN KPPAKEFPFT LDSFQSEAIK CLDNSESVMV SAHTSAGKTV
101: VASYAIAMSL RENQRVIYTS PIKALSNQKY RDFKEEFSDV GLMTGDVTID PNASCLVMTT EILRSMQYKG SEVMREVAWI IFDEVHYMRD SERGVVWEES
201: IVMAPKNSRF VFLSATVPNA KEFADWVAKV HKQPCHIVYT DYRPTPLQHY VFPAGGNGLY LVVDEKAKFH EDSFQKSLNA LVPANDADKK RENGKSQKGL
301: MLGKLGEESD IFKLVKMIIQ RQYDPVILFS FSKKECEALA MQVSNILPIL KRGIGVHHSG LLPILKEVIE ILFQEGLIKC LFATETFSIG LNMPAKTVVF
401: TNVRKFDGDK FRWLSSGEYI QMSGRAGRRG IDKRGICILM VDEKMEPAVA KSMLKGSADS LNSAFHLSYN MLLNQLRSED GDPENLLRNS FFQFQADRAI
501: PDLEKQIKAL QEERDSMVIE EEESLKKYYN LILQYKSLKK DIREIVFSPK YCLPFLLPNR AVCLDCANDD GEPRSFSIED QDTWGVIMKF NKVKSLSEDD
601: DNRRPEDANY TVDVLTRCLV SRDGFGKKKM KPVPIKERGE PVVVSVPLSQ IKSLSSAIMN IPKDYLQLEA RENALKKVSE LLSRHPDGIP LDPEVDMKIR
701: SSSYKKTVRR LEAVENLFEK YKIAKSPLIA EKLKVLHMKE ELTAKIKSLK KAVRSSTALA FKDELKARKR VLRRLGYITS DGVVELKGKV ACEISSAEEL
801: TLTELMFSGV FKEAKVEELV SLLSCFVWRE RLPDAAKPRE ELDLLFIQLQ DTARRVAEVQ LDCKVDIDVE SFVHSFRPDI MEAVYAWAKG SKFYEIMEIA
901: RVFEGSLIRA IRRMEEVLQQ LIVAAKSIGE TQLEAKLEEA VSKIKRDIVF AASLYL

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.