CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G048420.1	Barley	cytosol	11.64	53.66
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	37.04	47.95
CDY30903	Canola	nucleus	96.03	36.78
CDY65064	Canola	nucleus	94.18	35.92
Bra027835.1-P	Field mustard	nucleus	89.68	35.46
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	92.06	35.22
VIT_06s0009g01750.t01	Wine grape	cytosol	79.1	29.99
Solyc01g103080.2.1	Tomato	nucleus	78.31	29.87
PGSC0003DMT400053368	Potato	nucleus	78.04	29.74
TraesCS7D01G010500.1	Wheat	cytosol	77.51	29.66
EER87693	Sorghum	cytosol	78.04	29.47
TraesCS4A01G484300.2	Wheat	cytosol	77.51	29.45
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	77.51	29.3
KRH46878	Soybean	nucleus	74.87	28.85
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	76.19	28.46
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	77.25	28.05
TraesCS7A01G010800.1	Wheat	cytosol	77.25	27.42
CDY41593	Canola	cytosol	54.5	20.79
CDY44724	Canola	cytosol	53.97	20.65
Os12t0279000-01	Rice	mitochondrion	33.07	16.11
CDX86107	Canola	nucleus	39.95	11.23
CDX99082	Canola	cytosol	33.07	10.46
CDY11624	Canola	plastid	28.57	9.38
CDY38782	Canola	plastid	28.57	9.27
CDY56796	Canola	cytosol	19.84	8.2
CDY51662	Canola	nucleus	15.61	7.68
CDY22275	Canola	cytosol, nucleus, plasma membrane	19.58	6.97
CDY49767	Canola	nucleus	18.25	6.1
CDY03992	Canola	nucleus	17.99	5.99
CDY47017	Canola	cytosol	16.93	5.31
CDY48648	Canola	nucleus	12.96	4.76
CDY04587	Canola	plastid	3.97	4.1
CDY51661	Canola	nucleus	15.61	3.79
CDY22556	Canola	cytosol	18.52	3.33
CDX76355	Canola	cytosol	11.11	3.24
CDX75273	Canola	nucleus	16.93	3.18
CDY23339	Canola	nucleus	16.4	3.08
CDX68881	Canola	nucleus	16.67	3.03
CDY42855	Canola	nucleus, plastid	16.93	3.02
CDY31853	Canola	nucleus	7.41	2.33
CDY45148	Canola	endoplasmic reticulum	2.38	1.45
CDY01342	Canola	cytosol	4.23	1.44
CDX76356	Canola	nucleus	1.06	1.01
CDY33604	Canola	cytosol	0.26	0.34
CDY01343	Canola	cytosol	0.26	0.31
CDY31854	Canola	cytosol	0.26	0.31
CDY48646	Canola	cytosol	0.26	0.31
CDY28773	Canola	cytosol	0.26	0.31
CDX68879	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDX75272	Canola	nucleus	0.0	0.0
CDY52687	Canola	cytosol, mitochondrion	0.0	0.0
CDY47018	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:16.8.1.2.3.1	Gene3D:3.40.50.300	GO:A0A078I6W0	UniProt:A0A078I6W0	EnsemblPlants:CDY45149	ProteinID:CDY45149
ProteinID:CDY45149.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00081564001	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270
PFscan:PS51192	PANTHER:PTHR12131	PANTHER:PTHR12131:SF7	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0004EED6BB

Description

BnaA09g14430DBnaA09g14430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6W0]

Coordinates

chrLK032616:-:139026..141367

Molecular Weight (calculated)

42485.5 Da

IEP (calculated)

5.014

GRAVY (calculated)

-0.415

Length

378 amino acids

Sequence
(BLAST)

001: MGSVKRKSVE ESSDCAPPQK LQREDDGSTQ IINEELVGCV HDVSFPENYL PPAQGDKKPP AKEFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLREN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEV MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHKQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKAKFHEDS FQKSLNALVP ANDADKKREN GKSQKGLMLG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMDLNSDDE KDSVETIFTS AIDMLSDDDK KLPQASIH

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.