CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plastid 1
endoplasmic reticulum 5
extracellular 3
golgi 3
plasma membrane 3
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33604	Canola	cytosol	37.14	78.57
Bra027835.1-P	Field mustard	nucleus	98.39	64.02
CDY30903	Canola	nucleus	97.59	61.5
Os12t0279000-01	Rice	mitochondrion	75.4	60.44
CDY65064	Canola	nucleus	95.34	59.84
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	93.41	58.81
KRH46878	Soybean	nucleus	78.3	49.64
VIT_06s0009g01750.t01	Wine grape	cytosol	78.14	48.75
Solyc01g103080.2.1	Tomato	nucleus	75.72	47.53
PGSC0003DMT400053368	Potato	nucleus	75.72	47.48
EER87693	Sorghum	cytosol	75.56	46.95
TraesCS7D01G010500.1	Wheat	cytosol	74.12	46.66
TraesCS4A01G484300.2	Wheat	cytosol	74.44	46.53
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	74.76	46.5
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	75.4	46.34
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	73.15	43.71
TraesCS7A01G010800.1	Wheat	cytosol	73.31	42.82
CDY44724	Canola	cytosol	42.12	26.52
CDY41593	Canola	cytosol	42.12	26.44
HORVU1Hr1G048420.1	Barley	cytosol	2.57	19.51
CDX99082	Canola	cytosol	30.87	16.07
CDX86107	Canola	nucleus	31.19	14.42
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	5.95	12.67
CDY38782	Canola	plastid	21.86	11.67
CDY11624	Canola	plastid	20.9	11.28
CDY28773	Canola	cytosol	3.22	6.15
CDY01343	Canola	cytosol	3.22	6.15
CDY31854	Canola	cytosol	3.22	6.15
CDY48646	Canola	cytosol	3.22	6.15
CDY49767	Canola	nucleus	10.77	5.92
CDY51661	Canola	nucleus	14.79	5.91
CDY03992	Canola	nucleus	10.77	5.9
CDX76355	Canola	cytosol	11.58	5.55
CDY47018	Canola	cytosol	6.11	5.33
CDY22556	Canola	cytosol	17.04	5.04
CDY48648	Canola	nucleus	8.2	4.96
CDY56796	Canola	cytosol	7.23	4.92
CDY47017	Canola	cytosol	9.0	4.65
CDY42855	Canola	nucleus, plastid	15.59	4.57
CDY23339	Canola	nucleus	14.47	4.48
CDX68881	Canola	nucleus	14.79	4.43
CDY22275	Canola	cytosol, nucleus, plasma membrane	7.56	4.43
CDX75273	Canola	nucleus	14.15	4.38
CDY04587	Canola	plastid	2.41	4.1
CDY52687	Canola	cytosol, mitochondrion	5.63	4.08
CDY45149	Canola	nucleus	1.45	2.38
CDY31853	Canola	nucleus	4.34	2.25
CDY01342	Canola	cytosol	3.22	1.81
CDX76356	Canola	nucleus	0.16	0.25
CDY51662	Canola	nucleus	0.0	0.0
CDX75272	Canola	nucleus	0.0	0.0
CDX68879	Canola	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	UniProt:A0A078I7N7
EnsemblPlants:CDY45148	ProteinID:CDY45148	ProteinID:CDY45148.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00081563001	InterPro:Helicase_C
InterPro:IPR001650	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PFscan:PS51194
PANTHER:PTHR12131	PANTHER:PTHR12131:SF7	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2_C
UniParc:UPI0004EEB116	InterPro:rRNA_proc-arch_dom	:	:	:	:

Description

BnaA09g14440DBnaA09g14440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7N7]

Coordinates

chrLK032616:-:136183..138880

Molecular Weight (calculated)

70850.5 Da

IEP (calculated)

8.279

GRAVY (calculated)

-0.194

Length

622 amino acids

Sequence
(BLAST)

001: MLLFFVDLVS NILPILKRGI GVHHSGLLPI LKEVIEILFQ EGLIKCLFAT ETFSIGLNMP AKTVVFTNVR KFDGDKFRWL SSGEYIQMSG RAGRRGIDKR
101: GICILMVDEK MEPAVAKSML KGSADSLNSA FHLSYNMLLN QLRSEDGDPE NLLRNSFFQF QADRAIPDLE KQIKALQEER DSMVIEEEES LKKYYNLILQ
201: YKSLKKDIRE IVFSPKYCLP FLLPNRAVCL DCANDDGDPQ SFSMEDQDTW GVIMKFNKVK SPSEDDDNRR PEDANYTVDV LTRCLVSRDG FGKKKMKPVP
301: IKERGEPVVV SVPLSQIKSL SSAIMNIPKD YLQLEARENA LKKVSELLSR HPDGIPLDPE VDMKIRSSSY KKTVRRLEAV ENLFEKYKIA KSPLIAEKLK
401: VLHMKEELTA KIKSLKKAVR SSTALAFKDE LKARKRVLRR LGYITSYGVV ELKGKVACEI SSAEELTLTE LMFSGVFKEA KVEELVSLLS CFVWRERLPD
501: AAKPREELDL LFIQLQDTAR RVAEVQLDCK VDIDVESFVH SFRPDIMEAV YAWAKGSKFY EIMEIARVFE GSLIRAIRRM EEVLQQLIVA AKSIGETQLE
601: AKLEEAVSKI KRDIVFAASL YL

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.