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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75273 Canola nucleus 91.43 94.43
CDY51661 Canola nucleus 66.76 89.07
CDY23339 Canola nucleus 81.36 83.99
CDY51662 Canola nucleus 29.34 79.3
CDY49767 Canola nucleus 9.73 17.86
CDY56796 Canola cytosol 7.85 17.81
CDY03992 Canola nucleus 9.73 17.8
CDY45149 Canola nucleus 3.03 16.67
CDY48648 Canola nucleus 7.8 15.74
CDY30903 Canola nucleus 7.42 15.6
CDY65064 Canola nucleus 7.42 15.54
CDY22275 Canola cytosol, nucleus, plasma membrane 7.9 15.46
CDY28773 Canola cytosol 2.36 15.08
CDY48646 Canola cytosol 2.36 15.08
CDY31854 Canola cytosol 2.36 15.08
CDY01343 Canola cytosol 2.36 15.08
CDY45148 Canola endoplasmic reticulum 4.43 14.79
CDY44724 Canola cytosol 7.03 14.78
CDY41593 Canola cytosol 6.98 14.63
CDY38782 Canola plastid 7.95 14.16
VIT_06s0004g05980.t01 Wine grape mitochondrion 2.26 14.11
CDY11624 Canola plastid 7.71 13.89
CDY22556 Canola cytosol 14.02 13.84
Os02t0107000-01 Rice cytosol, nucleus 2.6 13.78
CDX76355 Canola cytosol 8.33 13.34
CDX99082 Canola cytosol 7.51 13.05
CDY47017 Canola cytosol 7.51 12.95
CDX86107 Canola nucleus 8.38 12.94
CDY42855 Canola nucleus, plastid 11.51 11.27
CDY33604 Canola cytosol 1.49 10.54
CDY47018 Canola cytosol 3.42 9.96
CDY52687 Canola cytosol, mitochondrion 3.66 8.86
CDY04587 Canola plastid 1.54 8.74
CDY31853 Canola nucleus 5.01 8.66
Os02t0106966-00 Rice nucleus 1.11 8.33
CDY01342 Canola cytosol 4.34 8.12
CDX76356 Canola nucleus 1.35 7.07
CDX68879 Canola cytosol, mitochondrion, nucleus 0.0 0.0
CDX75272 Canola nucleus 0.0 0.0
Protein Annotations
KEGG:00230+2.7.7.7KEGG:00240+2.7.7.7Gene3D:1.10.150.20Gene3D:1.10.3380.20Gene3D:1.20.1060.10MapMan:14.2.2
Gene3D:3.30.420.10Gene3D:3.30.70.370Gene3D:3.40.50.300GO:A0A078BVM8EnsemblPlants:CDX68881ProteinID:CDX68881
ProteinID:CDX68881.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domInterPro:DNA-dir_DNA_pol_A_palm_domInterPro:DNA_polymerase_AGO:GO:0000166
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003887GO:GO:0005488
GO:GO:0005524GO:GO:0006139GO:GO:0006259GO:GO:0006260GO:GO:0006261GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00130606001InterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR036397InterPro:P-loop_NTPasePFAM:PF00270
PFAM:PF00271PFAM:PF00476PRINTS:PR00868PFscan:PS51192PFscan:PS51194PANTHER:PTHR10133
PANTHER:PTHR10133:SF27InterPro:RNaseH_sfSMART:SM00482SMART:SM00487SMART:SM00490SUPFAM:SSF158702
SUPFAM:SSF52540SUPFAM:SSF56672UniParc:UPI0004EE4C38SEG:seg::
Description
BnaC01g05720D
Coordinates
chrLK031789:+:1691685..1702642
Molecular Weight (calculated)
228659.0 Da
IEP (calculated)
7.797
GRAVY (calculated)
-0.327
Length
2076 amino acids
Sequence
(BLAST)
0001: MDSDSSRSRI DQFYVSKKRK HLSPNLKSGR NEKNAKVTGE RSPGDKGTLD SYLKPSLDDK STSNSALQAK QKAFTKKLDL EVSRPPYAGE SIHPPLPKPA
0101: NAEISKGAEG CLNRGESRVL HKEGVATAEN HAPDVLLCAN QKDNSELRDF ATGFLSLYCS EVRSVVGSPT RQKANELKRC GSSSLLAQDV QISHKRRCDS
0201: ANIPSLDAPA YPLGSKPVSV ANIVDKRDKS VSDPAKKIPR NESVEIPMGL RKCTKAPESS AHLTECRTPG SAVKSCHVGT PKSGSGSSIF SPGDSFWNEA
0301: IQFADGLSVP TENSGSVEAK DRDNEDNCGD NLKRSLDLDE SRVKDKDATG YSKVAEKHGR DFNKEVSPLP VKNLELLFQD RKANGSTREQ CASFDQSNIT
0401: RGSSRTSQSA LVDNRGCGSL DVANNGPANK NLVGRMYPEP EENKVALCEG NHSARSVPAI SNMRKSADSS ESEESQTPSS SLHNKDGLSL STWLPSEVCS
0501: VYNKKGISKL YPWQPVTSIC HPKLICSSCV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVITTG KMALLVLPYV SICVEKAEHL EVLLEPLGKH
0601: VRSYYGNQGG GTLPKGTSVA VCTIEKANSL INRLLEEGRL SDLGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGSS SGKNDPAHGL
0701: QIVGMSATMP NVGAVADWLQ AALYQTEFRP VPLEEYIKVG NIIYNKKMEV VRTLPKAADI GGKDPDHIIE LCNEIVQEGN SVLIFCSSRK GCESTAKHIA
0801: KLIKKVLIDV DGENSEFMDI TSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD
0901: FLDGTRYKQM SGRAGRTGID TKGESVLICK PGELKRIMAL LNESCPPLES CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA
1001: QDSLRWLCHR KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR SREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG
1101: VVEPFLMRMA HGATVRTLNK PQDVKKNLRG EYDNRHGSTS SKMLSDEQML RVCKRFFVAL ILSKLVQEAS VSEVCEAFKV ARGMVQALQE NAGRFCSMVS
1201: VFCERLGWHD LEGLVAKLQN RVSFGVRAEI VELTSIPYVK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWATEG NSIFLRQRIQ LGLAKKIKNG
1301: ARKIVLEKAE EARAAAFSAF KSLGLDVHDL SNPLPLAPAS SLNGLVTIER DISRGIVAPN GLQNVPGQSS MVGHMERGNF DTDNHREKPR DVSGAALGVS
1401: SEVNLTDPLP DFQPIETTVG TDGTNAASEK GPITAGNIRG GFDSFLELWE SAGEFFFDIH FNKLQGLNSR ISYEIHGIAI CWDSSPVYYV NLNKDLLSLE
1501: FQIQVLKSPA ISIQRCTRLN LAEGIRDLEL VDGSWLMMPQ LTINHTIDMS IVTWILWPDE ERYSNPNIDK EVKKRLSPEA AEAANRSGRW RNQIRRVAHN
1601: GCCRRVAQTR ALCSALWKIL VSEELLEALT TTEMPLVNVL ADMELWGIGV DIEGCLGARN ILRDKLRSLE KKAFELAGMT FSLHNPADIS NVLFKQLKLP
1701: IPETQNKGKL HPSTDKQCLD LLRNEHPIVP IIKEHRTLAK LLNCTLGSIC SLAKLRLSTQ RYTLHGHWLQ TSTATGRLSI EEPNLQSVEH EVEFTLDKNG
1801: TEVNSDSDRY KVNARDFFVP TQENWLLLTA DYSQIELRLM AHFSRDPSLI AQLSQPEGDV FTMIAAKWTG KNEDSVSPHD RDQTKRLIYG ILYGMGANRL
1901: AEQLECSSDE AKEKIRSFKS SFPAVTSWLN ETVSFCQEKG YIQTLKGRRR FLSKIKFGNA KEKSKAQRQA VNSVCQGSAA DIIKIAMIKI YSTISEDIDS
2001: AASSSSTETR FHVLKGRCRI LLQVHDELVL EVDPSYLKEA AMLLQSSMEN AVSLLVPLHV KLKVGKTWGS LEPLQG
Best Arabidopsis Sequence Match ( AT4G32700.2 )
(BLAST)
0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD
Arabidopsis Description
TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.