Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027835.1-P | Field mustard | nucleus | 95.34 | 98.43 |
| CDY45148 | Canola | endoplasmic reticulum | 61.5 | 97.59 |
| CDY45149 | Canola | nucleus | 36.78 | 96.03 |
| CDY65064 | Canola | nucleus | 95.54 | 95.16 |
| AT1G59760.1 | Thale cress | cytosol, nucleus, plastid | 92.91 | 92.81 |
| CDY33604 | Canola | cytosol | 23.51 | 78.91 |
| VIT_06s0009g01750.t01 | Wine grape | cytosol | 78.52 | 77.73 |
| KRH46878 | Soybean | nucleus | 76.6 | 77.06 |
| Solyc01g103080.2.1 | Tomato | nucleus | 76.29 | 75.98 |
| PGSC0003DMT400053368 | Potato | nucleus | 76.29 | 75.91 |
| EER87693 | Sorghum | cytosol | 76.49 | 75.42 |
| TraesCS7D01G010500.1 | Wheat | cytosol | 75.28 | 75.2 |
| Os12t0279000-01 | Rice | mitochondrion | 58.97 | 75.0 |
| Zm00001d045590_P005 | Maize | cytosol, nucleus, plastid | 75.79 | 74.8 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 75.38 | 74.77 |
| GSMUA_Achr2P17890_001 | Banana | cytosol, nucleus, plastid | 75.68 | 73.81 |
| HORVU1Hr1G048420.1 | Barley | cytosol | 5.98 | 71.95 |
| HORVU7Hr1G001080.1 | Barley | cytosol, nucleus, plastid | 74.57 | 70.7 |
| TraesCS7A01G010800.1 | Wheat | cytosol | 74.77 | 69.3 |
| HORVU1Hr1G018080.31 | Barley | cytosol, nucleus, plastid | 17.33 | 58.56 |
| CDY41593 | Canola | cytosol | 47.01 | 46.82 |
| CDY44724 | Canola | cytosol | 46.81 | 46.76 |
| CDX99082 | Canola | cytosol | 32.12 | 26.53 |
| CDX86107 | Canola | nucleus | 34.85 | 25.58 |
| CDY38782 | Canola | plastid | 24.21 | 20.52 |
| CDY11624 | Canola | plastid | 23.61 | 20.23 |
| CDY56796 | Canola | cytosol | 12.26 | 13.22 |
| CDY49767 | Canola | nucleus | 13.37 | 11.67 |
| CDY03992 | Canola | nucleus | 13.27 | 11.54 |
| CDY22275 | Canola | cytosol, nucleus, plasma membrane | 12.26 | 11.4 |
| CDY47017 | Canola | cytosol | 12.06 | 9.88 |
| CDY48648 | Canola | nucleus | 10.23 | 9.82 |
| CDY51661 | Canola | nucleus | 15.2 | 9.64 |
| CDX76355 | Canola | cytosol | 11.45 | 8.71 |
| CDY22556 | Canola | cytosol | 17.43 | 8.18 |
| CDY04587 | Canola | plastid | 2.94 | 7.92 |
| CDY51662 | Canola | nucleus | 5.98 | 7.68 |
| CDY42855 | Canola | nucleus, plastid | 16.21 | 7.54 |
| CDX75273 | Canola | nucleus | 15.3 | 7.51 |
| CDY23339 | Canola | nucleus | 15.3 | 7.51 |
| CDX68881 | Canola | nucleus | 15.6 | 7.42 |
| CDY01343 | Canola | cytosol | 2.03 | 6.15 |
| CDY31854 | Canola | cytosol | 2.03 | 6.15 |
| CDY48646 | Canola | cytosol | 2.03 | 6.15 |
| CDY28773 | Canola | cytosol | 2.03 | 6.15 |
| CDY47018 | Canola | cytosol | 3.85 | 5.33 |
| CDY31853 | Canola | nucleus | 5.47 | 4.5 |
| CDY52687 | Canola | cytosol, mitochondrion | 3.34 | 3.85 |
| CDY01342 | Canola | cytosol | 3.55 | 3.16 |
| CDX76356 | Canola | nucleus | 0.71 | 1.77 |
| CDX75272 | Canola | nucleus | 0.0 | 0.0 |
| CDX68879 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | GO:A0A078H226 |
| UniProt:A0A078H226 | EnsemblPlants:CDY30903 | ProteinID:CDY30903 | ProteinID:CDY30903.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00046433001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 |
| PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF7 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C |
| UniParc:UPI0004EF3FDB | InterPro:rRNA_proc-arch_dom | : | : | : | : |
Description
BnaC09g15030DBnaC09g15030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H226]
Coordinates
chrLK032263:-:323153..328084
Molecular Weight (calculated)
111619.0 Da
IEP (calculated)
6.225
GRAVY (calculated)
-0.274
Length
987 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVKRKSVE ESSDCAPPQK LQREDDDSTQ IINEELVGCV HDVSFPENYL PPAPSAQGDN KPPAKEFPFT LDSFQSEAIK CLDNGESVMV SAHTSAGKTV
101: VASYAIAMSL RENQRVIYTS PIKALSNQKY RDFKEEFSDV GLMTGDVTID PNASCLVMTT EILRSMQYKG SEVMREVAWI IFDEVHYMRD SERGVVWEES
201: IVMAPKNSRF VFLSATVPNA KEFADWVAKV HKQPCHIVYT DYRPTPLQHY VFPAGGSGLY LVVDEKAKFH EDSFQKSLNA LVPANDADKK RENGKSHKGL
301: MLGKLGEESD IFKLVKMIIQ RQYDPVILFS FSKKECEALA MQMSKMDLNS DDEKDSVETI FTISDVISLS DKLVSNILPI LKRGIGVHHS GLLPILKEVI
401: EILFQEGLIK CLFATETFSI GLNMPAKTVV FTNVRKFDGD KFRWLSSGEY IQMSGRAGRR GIDKRGICIL MVDEKMEPAV AKSMLKGSAD SLNSAFHLSY
501: NMLLNQLRSE DGDPENLLRN SFFQFQADRA IPDLEKQIKA LLEERDSMVI EEEESLKKYY NLILQYKSLK KDIREIVFSP KYCLPFLLPN RAVCLDCAND
601: AGEPQSFSIE DQDTWGVIMK FNKVKSLSED DDNRRPEDAN YTVDVLTRCL VSRDGAGKKK MRPVPYKERG EPVVVSVPLS QIKSLSSAIM NIPKDYLQLE
701: ARENALKKVS ELLSRHPDGI PLDPEVDMKI RSSSYKKTVR RLEAVENLFE KYKIAKSPLI AEKLKVLHMK EELTAKIKSL KKAVRSSTAL AFKDELKARK
801: RVLRRLGYIT SDGVVELKGK VACEISSAEE LTLTELMFSG VFKEAKVEEL VSLLSCFVWR ERLPDAAKPR EELDLLFIQL QDTARRVAEV QLDCKVDIDV
901: ESFVHSFRPD IMEAVYAWAK GSKFYEIMEI ARVFEGSLIR AIRRMEEVLQ QLIVAAKSIG ETELEGKLEE AVSKIKRDIV FAASLYL
101: VASYAIAMSL RENQRVIYTS PIKALSNQKY RDFKEEFSDV GLMTGDVTID PNASCLVMTT EILRSMQYKG SEVMREVAWI IFDEVHYMRD SERGVVWEES
201: IVMAPKNSRF VFLSATVPNA KEFADWVAKV HKQPCHIVYT DYRPTPLQHY VFPAGGSGLY LVVDEKAKFH EDSFQKSLNA LVPANDADKK RENGKSHKGL
301: MLGKLGEESD IFKLVKMIIQ RQYDPVILFS FSKKECEALA MQMSKMDLNS DDEKDSVETI FTISDVISLS DKLVSNILPI LKRGIGVHHS GLLPILKEVI
401: EILFQEGLIK CLFATETFSI GLNMPAKTVV FTNVRKFDGD KFRWLSSGEY IQMSGRAGRR GIDKRGICIL MVDEKMEPAV AKSMLKGSAD SLNSAFHLSY
501: NMLLNQLRSE DGDPENLLRN SFFQFQADRA IPDLEKQIKA LLEERDSMVI EEEESLKKYY NLILQYKSLK KDIREIVFSP KYCLPFLLPN RAVCLDCAND
601: AGEPQSFSIE DQDTWGVIMK FNKVKSLSED DDNRRPEDAN YTVDVLTRCL VSRDGAGKKK MRPVPYKERG EPVVVSVPLS QIKSLSSAIM NIPKDYLQLE
701: ARENALKKVS ELLSRHPDGI PLDPEVDMKI RSSSYKKTVR RLEAVENLFE KYKIAKSPLI AEKLKVLHMK EELTAKIKSL KKAVRSSTAL AFKDELKARK
801: RVLRRLGYIT SDGVVELKGK VACEISSAEE LTLTELMFSG VFKEAKVEEL VSLLSCFVWR ERLPDAAKPR EELDLLFIQL QDTARRVAEV QLDCKVDIDV
901: ESFVHSFRPD IMEAVYAWAK GSKFYEIMEI ARVFEGSLIR AIRRMEEVLQ QLIVAAKSIG ETELEGKLEE AVSKIKRDIV FAASLYL
001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
Arabidopsis Description
MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.