CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75272	Canola	nucleus	98.84	99.42
CDY23339	Canola	nucleus	6.4	0.55
CDY44724	Canola	cytosol	0.58	0.1
CDY41593	Canola	cytosol	0.58	0.1
CDY48646	Canola	cytosol	0.0	0.0
VIT_06s0004g05980.t01	Wine grape	mitochondrion	0.0	0.0
CDY42855	Canola	nucleus, plastid	0.0	0.0
CDX68881	Canola	nucleus	0.0	0.0
CDY45148	Canola	endoplasmic reticulum	0.0	0.0
CDY45149	Canola	nucleus	0.0	0.0
CDY47017	Canola	cytosol	0.0	0.0
Os02t0107000-01	Rice	cytosol, nucleus	0.0	0.0
CDY47018	Canola	cytosol	0.0	0.0
Os02t0106966-00	Rice	nucleus	0.0	0.0
CDY48648	Canola	nucleus	0.0	0.0
CDY49767	Canola	nucleus	0.0	0.0
CDY51661	Canola	nucleus	0.0	0.0
CDY51662	Canola	nucleus	0.0	0.0
CDY52687	Canola	cytosol, mitochondrion	0.0	0.0
CDY56796	Canola	cytosol	0.0	0.0
CDY65064	Canola	nucleus	0.0	0.0
CDY04587	Canola	plastid	0.0	0.0
CDX75273	Canola	nucleus	0.0	0.0
CDX76355	Canola	cytosol	0.0	0.0
CDX76356	Canola	nucleus	0.0	0.0
CDX86107	Canola	nucleus	0.0	0.0
CDX99082	Canola	cytosol	0.0	0.0
CDY01342	Canola	cytosol	0.0	0.0
CDY01343	Canola	cytosol	0.0	0.0
CDY03992	Canola	nucleus	0.0	0.0
CDY38782	Canola	plastid	0.0	0.0
CDY11624	Canola	plastid	0.0	0.0
CDY22275	Canola	cytosol, nucleus, plasma membrane	0.0	0.0
CDY22556	Canola	cytosol	0.0	0.0
CDY28773	Canola	cytosol	0.0	0.0
CDY30903	Canola	nucleus	0.0	0.0
CDY31853	Canola	nucleus	0.0	0.0
CDY31854	Canola	cytosol	0.0	0.0
CDY33604	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.490.10	MapMan:35.1	GO:A0A078BY74	EnsemblPlants:CDX68879	ProteinID:CDX68879	ProteinID:CDX68879.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0019825	GO:GO:0020037	EnsemblPlantsGene:GSBRNA2T00130604001	InterPro:Globin-like_sf
InterPro:Globin/Proto	InterPro:Hemoglobin_trunc	InterPro:IPR012292	PFAM:PF01152	PANTHER:PTHR10681	PANTHER:PTHR10681:SF52
SUPFAM:SSF46458	UniParc:UPI0004EEA852	SEG:seg	:	:	:

Description

BnaC01g05740D

Coordinates

chrLK031789:+:1689490..1691122

Molecular Weight (calculated)

19914.2 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.744

Length

172 amino acids

Sequence
(BLAST)

001: MQSLQEKASA WSGVDQADAF AIDESNLFEK LGLQSFINLS TNFYTRVYDD EEEEWFRSMF ANSKKEDAIQ NQYEFFVQRM GGPPLYSQRK GHPALIGRHR
101: PFPVTHEAAE RWLQHMQNAM DESVDIDQDS KVKMMNFFRH TAFFLVAGNE LQNQNQNNQV ACKHAATKPA EE

Best Arabidopsis Sequence Match ( AT4G32690.1 )
(BLAST)

001: MQSLQDKASV LSGVDQAEAF AIDESNLFDK LGLQTFINLS TNFYTRVYDD EEEWFQSIFS NSNKEDAIQN QYEFFVQRMG GPPLYSQRKG HPALIGRHRP
101: FPVTHQAAER WLEHMQNALD DSVDIDQDSK IKMMKFFRHT AFFLVAGNEL KNQNEKPKHK PQCACKHAAN KPAEE

Arabidopsis Description

GLB3GLB3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.