Factsheet for HORVU4Hr1G018990.9

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G216300.1	Wheat	cytosol	93.83	96.91
TraesCS4D01G091400.1	Wheat	cytosol	93.73	96.05
HORVU2Hr1G028060.7	Barley	cytosol	90.45	93.24
TraesCS4B01G094600.1	Wheat	nucleus	96.14	90.97
Os11t0176200-01	Rice	nucleus	86.69	89.63
EES02351	Sorghum	nucleus	84.96	87.75
Zm00001d008777_P008	Maize	nucleus	84.57	87.18
VIT_11s0065g00340.t01	Wine grape	cytosol	75.8	79.0
Solyc05g047520.2.1	Tomato	nucleus	69.14	76.6
KRH41401	Soybean	nucleus	71.94	76.43
KRH60115	Soybean	cytosol	70.78	75.9
PGSC0003DMT400035614	Potato	cytosol	72.9	75.9
Bra029783.1-P	Field mustard	cytosol	70.88	74.7
Solyc12g017860.1.1	Tomato	nucleus	67.6	74.57
AT2G06990.1	Thale cress	nucleus	71.55	74.57
CDY44724	Canola	cytosol	70.97	74.49
CDY41593	Canola	cytosol	71.07	74.37
PGSC0003DMT400052548	Potato	cytosol	70.11	74.26
GSMUA_Achr3P05450_001	Banana	nucleus	75.99	72.96
HORVU1Hr1G048420.1	Barley	cytosol	4.53	57.32
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	46.38	46.21
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	12.73	45.21
HORVU6Hr1G025670.1	Barley	nucleus	32.98	25.02
HORVU6Hr1G076860.2	Barley	plastid	22.66	19.65
HORVU4Hr1G049830.57	Barley	nucleus	13.02	12.03
HORVU7Hr1G040480.2	Barley	cytosol, mitochondrion	16.88	8.14
HORVU1Hr1G065680.1	Barley	nucleus	13.21	8.09
HORVU6Hr1G004350.3	Barley	cytosol, mitochondrion, nucleus	16.88	7.99
HORVU4Hr1G068170.2	Barley	cytosol, nucleus	15.72	7.8
HORVU0Hr1G026710.1	Barley	plastid	13.89	7.47

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	UniProt:A0A287NFE3
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:EF_Hand_1_Ca_BS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006401	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
EnsemblPlantsGene:HORVU4Hr1G018990	EnsemblPlants:HORVU4Hr1G018990.9	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198
ScanProsite:PS00018	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF6	SMART:SM00487
SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI000B47A0A0
InterPro:rRNA_proc-arch_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:88533426..88541370

Molecular Weight (calculated)

116284.0 Da

IEP (calculated)

7.069

GRAVY (calculated)

-0.296

Length

1037 amino acids

Sequence
(BLAST)

0001: HVPHHQASSS SAHPAPPPRR TLVAALHFLR RLRQTEREAA SRKMEEVENT SKRKAPELDS EDSSAAAVLD GQQSLPGLAA KRQNLSRTCI HEVAAPSGYD
0101: LSKDEAVHGT LSNPVFNGKM AKTYPFQLDP FQSVSIACLE RNESVLVSAH TSAGKTAVAE YAIAMSFRDK QRVIYTSPLK ALSNQKYREL SQEFSDVGLM
0201: TGDVTLQPNA TCLVMTTEIL RAMLYRGSEV IKEVGWVIFD EIHYMKDRER GVVWEESIVF LPPAIKMVFL SATMSNATEF AEWICNLHKQ PCHVVYTDFR
0301: PTPLQHYVFP IGGSGLYLVV DENGQFREDN FLKLQDTFAK QPSQLDGKKS GGPKASGRIA KGGNASGTSD IYRIVKMIME RKFQPVIIFS FSRRECEHHA
0401: MSMSKLDFNT EEEKDSIEQV FRSAIFCLSE EDRGLPAIEL MLPLLKRGIA VHHSGLLPII KELVELLFQE GLVKALFATE TFAMGLNMPA KTVVFTSVKK
0501: WDGDSNRFIG SGEYIQMSGR AGRRGKDERG ICVIMIDEKM EMSVIKDMVL GKPAPLISTF RLSYYTILNL LSRAEGQFTA EHVIRNSFHQ FQYEKALPEV
0601: VQKITRLENE ASLLGSSGEN DLAEYHKLGL DISELEKKIM SEMIRPERAL LYLVPGRLVK VRDGSTDWGW GVVVNVVKKP PASSSLPPAL SASRNNNYIV
0701: DTLLHCSSSS SESGLRSKPC PPRAGEKGEM HVVPVPLPLV CGLSSIRISI PSDLRPPEAR QNILFAVHEL GKRYPQGLPK LHPITDMGIE EPELVDLVHK
0801: LEDLEQKLCS HPLHKSDQSE QQLSWYQRKA ELNHEIQQLK SKMRDSQLQK FRDELKNRSR VLKMLGHIDA DGVLQLKGRA ACLIDTGDEL LITELMFNGT
0901: FNDLDHHQVA SVVSCFVPCE KSSEQIRLRN ELSKPMIQLQ EAARKIAEVQ RECKLDVNVE EYVESTCKPY LMDVIYCWSK GATFGEVTEM TDIFEGSIIR
1001: LVRRLDEFLN QLKAAAEAVG EVNLESKFGS ASKSLHR

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.