Factsheet for Zm00001d008777_P008

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02351	Sorghum	nucleus	96.32	96.51
Os11t0176200-01	Rice	nucleus	89.26	89.53
TraesCS2B01G179600.1	Wheat	cytosol	88.27	88.27
TraesCS4A01G216300.1	Wheat	cytosol	87.97	88.15
TraesCS2D01G159900.1	Wheat	cytosol	87.97	87.97
HORVU2Hr1G028060.7	Barley	cytosol	87.87	87.87
TraesCS2A01G154400.1	Wheat	cytosol	87.97	87.36
TraesCS4D01G091400.1	Wheat	cytosol	87.77	87.25
HORVU4Hr1G018990.9	Barley	plastid	87.18	84.57
TraesCS4B01G094600.1	Wheat	nucleus	87.97	80.75
VIT_11s0065g00340.t01	Wine grape	cytosol	78.33	79.2
Solyc05g047520.2.1	Tomato	nucleus	72.07	77.46
KRH41401	Soybean	nucleus	74.65	76.95
PGSC0003DMT400035614	Potato	cytosol	75.94	76.71
KRH60115	Soybean	cytosol	73.46	76.42
Bra029783.1-P	Field mustard	cytosol	74.35	76.02
CDY41593	Canola	cytosol	74.75	75.88
CDY44724	Canola	cytosol	74.45	75.81
AT2G06990.1	Thale cress	nucleus	74.75	75.58
Solyc12g017860.1.1	Tomato	nucleus	69.58	74.47
PGSC0003DMT400052548	Potato	cytosol	71.87	73.85
GSMUA_Achr3P05450_001	Banana	nucleus	77.93	72.59
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	48.01	48.3
Zm00001d015314_P003	Maize	cytosol	35.69	25.42
Zm00001d017982_P001	Maize	plastid	24.06	20.6
Zm00001d051111_P001	Maize	nucleus	12.92	10.05
Zm00001d022286_P003	Maize	plastid	17.59	8.1
Zm00001d048095_P005	Maize	mitochondrion	15.81	7.63
Zm00001d023796_P033	Maize	nucleus, plastid	14.81	7.12

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	UniProt:A0A1D6FFF1
ProteinID:AQK90664.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:EF_Hand_1_Ca_BS	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006397	GO:GO:0006401
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010093	GO:GO:0016607	GO:GO:0016787	GO:GO:0040029
GO:GO:0060149	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	ScanProsite:PS00018
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF6	SMART:SM00487	SMART:SM00490
SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI0008435198	EnsemblPlantsGene:Zm00001d008777
EnsemblPlants:Zm00001d008777_P008	EnsemblPlants:Zm00001d008777_T008	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:

Description

DExH-box ATP-dependent RNA helicase DExH10

Coordinates

chr8:+:19654863..19663867

Molecular Weight (calculated)

112979.0 Da

IEP (calculated)

6.611

GRAVY (calculated)

-0.307

Length

1006 amino acids

Sequence
(BLAST)

0001: MGEEAESNCK RKAPDSSVEE QPSLAPAPAQ SQADPAAKRP NISRSCVHEV AVPNGYESVK DEAVHGTLAS PAFNGEMAKQ YPFKLDPFQS VSIACLERNE
0101: SVLVSAHTSA GKTVVAEYAI AMAFRDKQRV IYTSPLKALS NQKYRELSQE FTDVGLMTGD VTLHPNATCL VMTTEILRAM LYRGSEVIKE VAWVIFDEIH
0201: YMKDRERGVV WEESIIFLPP AIKMVFLSAT MSNATEFAEW ICSLHKQPCH VVYTDFRPTP LQHYMFPIGG SGLYLVVDEN GQFREDNFAK LQDSFAKPNN
0301: QLDGRKGGGP KASGRIAKGG SASGNSDIYR IVKMIMERKF QPVIIFSFSR RECEHHAMSM SKLDFSTEEE KECIEQVFCN AIGCLVEEDR SLPAIELMLP
0401: LLKRGIAVHH SGLLPIIKEL VELLFQEGLV KALFATETFA MGLNMPAKTV VFTSVKKWDG DSNRYIGSGE YIQMSGRAGR RGKDERGICV IMIDEKVKME
0501: MSVIKDMVLG KPAPLVSTFR LSYYTILNLM SRVEGQFTAE HVIRHSFHEF QYEKALPEIA QKITRLENEA TLLDSSGETD LAEYHKLGLD ISELEKKIMS
0601: EMIRPERALL YLVPGRLVRV RDGSTDWGWG VVVNVVKKPP ASGTLPPALS ASRSNNYTVD TLLHCSSNSS ENGSRSKPCP PRPGEKGEMH VVPVPLPLVS
0701: GLSSVRINIP PDLRPPEARQ NILSAVQELG KRYPQGLPKL HPINDMGIQE PELVDLVHKL EDLEQKQCSH RLHKSGQSEQ ELSWYQKKAD LNTEIQQLKS
0801: KMRDSQLQKF RDELRNRSRV LKMLGHIDAD GVLQLKGRAA CLIDTGDELL ITELMFNGTF NDLDHHQVAS LASCFVPCDK SSEQIRLRNE LSRPMMQLQE
0901: AARKIAEVQR ECKLEVNVEE YVESTCRPYL MDVIYCWSRG ATFAEVMEMT DIFEGSVIRL ARRLDEFLNQ LRAAAEAVGE VNLEKKFKNA SESLRRGIMF
1001: SNSLYL

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.