Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47017 | Canola | cytosol | 71.45 | 42.16 |
| KRH54676 | Soybean | nucleus | 73.84 | 25.14 |
| Solyc06g069480.2.1 | Tomato | nucleus | 73.56 | 25.05 |
| CDY42855 | Canola | nucleus, plastid | 72.01 | 24.14 |
| GSMUA_Achr8P28180_001 | Banana | cytosol | 66.67 | 23.63 |
| Bra029333.1-P | Field mustard | plastid | 70.6 | 23.53 |
| AT5G61140.2 | Thale cress | plastid | 70.89 | 23.37 |
| KXG39883 | Sorghum | mitochondrion | 64.14 | 21.88 |
| Zm00001d048095_P005 | Maize | mitochondrion | 63.57 | 21.69 |
| TraesCS4D01G247100.1 | Wheat | mitochondrion, peroxisome | 62.45 | 21.37 |
| TraesCS4A01G057200.1 | Wheat | mitochondrion, peroxisome | 62.31 | 21.32 |
| TraesCS4B01G247900.1 | Wheat | mitochondrion, peroxisome | 62.31 | 21.32 |
| HORVU4Hr1G068170.2 | Barley | cytosol, nucleus | 62.31 | 21.21 |
| VIT_05s0102g00480.t01 | Wine grape | cytosol | 31.08 | 10.69 |
| VIT_06s0009g01750.t01 | Wine grape | cytosol | 10.83 | 7.72 |
| VIT_06s0004g05980.t01 | Wine grape | mitochondrion | 3.52 | 7.51 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 13.08 | 7.29 |
| VIT_11s0065g00340.t01 | Wine grape | cytosol | 9.56 | 6.83 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 10.13 | 6.59 |
| VIT_01s0026g01000.t01 | Wine grape | cytosol | 9.42 | 6.3 |
| VIT_04s0008g03960.t01 | Wine grape | nucleus | 12.8 | 4.22 |
| VIT_17s0000g07230.t01 | Wine grape | cytosol | 0.98 | 0.51 |
| CDY47018 | Canola | cytosol | 0.28 | 0.28 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ProteinID:CCB43036 | ProteinID:CCB43036.1 | InterPro:DEAD/DEAH_box_helicase_dom | UniProt:F6GSZ5 |
| EMBL:FN594950 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFscan:PS51192 | PANTHER:PTHR24075 | PANTHER:PTHR24075:SF6 | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI00021091B0 |
| ArrayExpress:VIT_17s0000g07240 | EnsemblPlantsGene:VIT_17s0000g07240 | EnsemblPlants:VIT_17s0000g07240.t01 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr17:-:8095032..8103824
Molecular Weight (calculated)
79937.9 Da
IEP (calculated)
5.594
GRAVY (calculated)
-0.342
Length
711 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVQLPRLTN SLRDPFDVDH AYLQRKLILQ NHNPRSDANS VEESELARKI VHGWDEASIE VCQAYKHFIA AVVELIDGEV ASEYFREVAL LVYNLFTGPR
101: DEYEDDTRIA EKKLELQKLL GYVVSDANLQ KVASLAQRLF NLQPNNLVTG LVHERQVHGS SDDVEFGANL AFQAPSRFLV DASLEDEEFL GEESAPPSAG
201: RDRWYDHTAS THDHSAVDRR NFTLRWLRDA CDGIVRGSTS QLSQDELAMA ICRVLDSDKP GEEIAGDLLD LVGDNAFEMV QDIISHRKDL TDAIHHGLLV
301: LKSEKAASNS QSRMPSYGTQ VTVQTESERQ IDKLRRKEEK RHRRGSEYGV GDNLLAANFS SLLEASENKS PFDGLIGSGE GPHSLPVTAL PQGTLRKHYK
401: GYEEVIVPPT PTAQLKPGEK LIDIKELDDF AQAAFHGYKS LNRIQSRIFQ TVYYTNENVL VCAPTGAGKT NIAMIAILHE IGQHFKDGYL HKNEFKIVYV
501: APMKALAAEV TSTFSHRLSP LNISVRELTG DMQLSKYELE ETQMIVTTPE KWDVITRKSS DMSLSMLVKL LIIDEVHLLN DDRGAVIEAL VARTLRQVES
601: TQTMIRIVGL SATLPNYLEV AQFLRVNPEA GLFYFDSSYR PVPLAQQYIG ISEQNFLART ELLNEICYNK VVDSLRQGHQ AMVFVHSRKD TAKTAEKLDI
701: LKHSLCKYEQ S
101: DEYEDDTRIA EKKLELQKLL GYVVSDANLQ KVASLAQRLF NLQPNNLVTG LVHERQVHGS SDDVEFGANL AFQAPSRFLV DASLEDEEFL GEESAPPSAG
201: RDRWYDHTAS THDHSAVDRR NFTLRWLRDA CDGIVRGSTS QLSQDELAMA ICRVLDSDKP GEEIAGDLLD LVGDNAFEMV QDIISHRKDL TDAIHHGLLV
301: LKSEKAASNS QSRMPSYGTQ VTVQTESERQ IDKLRRKEEK RHRRGSEYGV GDNLLAANFS SLLEASENKS PFDGLIGSGE GPHSLPVTAL PQGTLRKHYK
401: GYEEVIVPPT PTAQLKPGEK LIDIKELDDF AQAAFHGYKS LNRIQSRIFQ TVYYTNENVL VCAPTGAGKT NIAMIAILHE IGQHFKDGYL HKNEFKIVYV
501: APMKALAAEV TSTFSHRLSP LNISVRELTG DMQLSKYELE ETQMIVTTPE KWDVITRKSS DMSLSMLVKL LIIDEVHLLN DDRGAVIEAL VARTLRQVES
601: TQTMIRIVGL SATLPNYLEV AQFLRVNPEA GLFYFDSSYR PVPLAQQYIG ISEQNFLART ELLNEICYNK VVDSLRQGHQ AMVFVHSRKD TAKTAEKLDI
701: LKHSLCKYEQ S
0001: MVHNSPCNKH KTTSISWTRI LAGRCTGLFV QVSNRRRFRT QAIAFFLGEP TRGENTTEEK NPKRHKYRDF VMLVQLPRLT SSLREPFDID QAYLRRKTIL
0101: QTLNKPRSSG NRLDESDLAK RIVHQWEGAS LEVRQAYKQF IGAVVELIDR EVPSDEFREV AFSAYRLFNN PVEEDDSDIN DNISISGKKL ELQNLVGHAV
0201: SDANVKNVAS FAQALYSIQP THQSETYADE VNGGAEFGAD LVFNLPARFL VEASLDETGF VDVESNDAHT SFSEGWSGVS DTKNNLSAGK FNLSWLRDAC
0301: GRMVRETNSQ LSREELAMAI CRFLDSDKPG EEIAGDLLDL VGDGAFETVQ DLIMHRKEIV DAIHHGQMIL KSDKAASNTQ SRMPTYGTQV TVQTESAKQI
0401: EKLRRKEEKK NKRNADLGLE SEISEANFSS LLEASEKKTA FEDLIGSGEA NSLALALPQG TVRKHLKGYE EVFIPPTPTA QMKPGEKLIE IKELDDFAQA
0501: AFHGYKSLNR IQSRIFQTVY HTNENILVCA PTGAGKTNIA MISVLHEIKQ HFRDGYLHKN EFKIVYVAPM KALAAEVTSA FSRRLAPLNM VVKELTGDMQ
0601: LTKTELEETQ MIVTTPEKWD VITRKSSDMS MSMLVKLLII DEVHLLNDDR GAVIEALVAR TLRQVESTQT MIRIVGLSAT LPSYLQVAQF LRVNTDTGLF
0701: YFDSSYRPVP LAQQYIGITE HNFAARNELL NEICYKKVVD SIKQGHQAMI FVHSRKDTSK TAEKLVDLAR QYETLDLFTN ETHPQFQLMK KDVMKSRNKD
0801: LVKFFEAGFG IHHAGMLRSD RTLTERLFSD GLLKVLVCTA TLAWGVNLPA HTVVIKGTQL YDAKAGGWKD LGMLDVMQIF GRAGRPQFDK SGEGIIITSH
0901: DKLAYYLRLL TSQLPIESQF ISSLKDNLNA EVVLGTVTNV KEACAWLGYT YLSIRMKLNP LAYGIGWEEI IADPSLSLKQ RALVADAARS LDKAKMMRFD
1001: EKSGNFYCTE LGRVASHFYI QYSSVETYNE MLKRHMNESE IINMVAHSSE FENIVVREEE QHELETLARS CCPLEVKGGP SNKHGKISIL IQLYISRGSI
1101: DAFSLVSDAS YISASLARIM RALFEICLRK GWCEMTLFML EYCKAVDRQL WPHQHPLRQF ERDLPSDILR KLEERRDDLD HLYEMEEKEI GALIRYNPGG
1201: RLVKQHLGYF PSIQLAATVS PITRTVLKVD LLITPNFIWK DRFHGTALRW WILIEDTEND YIYHSDLFTL TKRMARGEPQ KLSFTVPIFE PHPPQYYVHA
1301: VSDSWLHAET YFTISFHNLA LPEARTSHTE LLDLKPLPVT SLGNKLYESL YKFSHFNPIQ TQIFHVLYHT DNNVLVGAPT GSGKTISAEL AMLRLFSTQP
1401: DMKVVYIAPL KAIVRERMND WKKHLVAPLG KEMVEMTGDY TPDLVALLSA DIIISTPEKW DGISRNWHTR SYVKKVGLVI LDEIHLLGAD RGPILEVIVS
1501: RMRYISSQTE RSVRFVGLST ALANAGDLAD WLGVGEIGLF NFKPSVRPVP IEVHIQGYPG KYYCPRMNSM NKPAYAAICT HSPTKPVLIF VSSRRQTRLT
1601: ALDLIQFAAS DEHPRQFLSV SEEDLQMVLS QITDQNLRHT LQFGIGLHHA GLNDHDRSAV EELFTNNKIQ VLVSTSTLAW GVNLPAHLVI IKGTEYFDGK
1701: TKRYVDFPLT EILQMMGRAG RPQFDQHGKA VILVHEPKKS FYKKFLYEPF PVESSLKEKL HDHFNAEIVS GTIGNKEDAV HYLTWTYLFR RLMANPAYYG
1801: LEGTQDETIC SYLSRLVQTT FEDLEDSGCL KVNEDSVEPT MLGTIASQYY LCYMTVSMFG SNIGPDTSLE AFLHILAGAS EYDELPVRHN EENYNKTLSD
1901: RVRYPVDNNH LDDPHVKANL LFQAHFSQLA LPISDYNTDL KSVLDQSIRI LQAMIDICAN SGWLSSSLTC MRLLQMVMQG MWSDQDSSLW MIPCMNDLLL
2001: GSLTARGIHT LHQLLNLPRE TLQSVTENFP ASRLSQDLQR FPRIQMNVRL QKKDSDGKKK PSTLEIRLEK TSKRNSSRAL APRFPKVKDE AWWLVLGDTS
2101: TSELFAVKRV SFTGRLITRM ELPPNITSFQ DTKLILVSDC YLGFEQEHSI EQLARRG
0101: QTLNKPRSSG NRLDESDLAK RIVHQWEGAS LEVRQAYKQF IGAVVELIDR EVPSDEFREV AFSAYRLFNN PVEEDDSDIN DNISISGKKL ELQNLVGHAV
0201: SDANVKNVAS FAQALYSIQP THQSETYADE VNGGAEFGAD LVFNLPARFL VEASLDETGF VDVESNDAHT SFSEGWSGVS DTKNNLSAGK FNLSWLRDAC
0301: GRMVRETNSQ LSREELAMAI CRFLDSDKPG EEIAGDLLDL VGDGAFETVQ DLIMHRKEIV DAIHHGQMIL KSDKAASNTQ SRMPTYGTQV TVQTESAKQI
0401: EKLRRKEEKK NKRNADLGLE SEISEANFSS LLEASEKKTA FEDLIGSGEA NSLALALPQG TVRKHLKGYE EVFIPPTPTA QMKPGEKLIE IKELDDFAQA
0501: AFHGYKSLNR IQSRIFQTVY HTNENILVCA PTGAGKTNIA MISVLHEIKQ HFRDGYLHKN EFKIVYVAPM KALAAEVTSA FSRRLAPLNM VVKELTGDMQ
0601: LTKTELEETQ MIVTTPEKWD VITRKSSDMS MSMLVKLLII DEVHLLNDDR GAVIEALVAR TLRQVESTQT MIRIVGLSAT LPSYLQVAQF LRVNTDTGLF
0701: YFDSSYRPVP LAQQYIGITE HNFAARNELL NEICYKKVVD SIKQGHQAMI FVHSRKDTSK TAEKLVDLAR QYETLDLFTN ETHPQFQLMK KDVMKSRNKD
0801: LVKFFEAGFG IHHAGMLRSD RTLTERLFSD GLLKVLVCTA TLAWGVNLPA HTVVIKGTQL YDAKAGGWKD LGMLDVMQIF GRAGRPQFDK SGEGIIITSH
0901: DKLAYYLRLL TSQLPIESQF ISSLKDNLNA EVVLGTVTNV KEACAWLGYT YLSIRMKLNP LAYGIGWEEI IADPSLSLKQ RALVADAARS LDKAKMMRFD
1001: EKSGNFYCTE LGRVASHFYI QYSSVETYNE MLKRHMNESE IINMVAHSSE FENIVVREEE QHELETLARS CCPLEVKGGP SNKHGKISIL IQLYISRGSI
1101: DAFSLVSDAS YISASLARIM RALFEICLRK GWCEMTLFML EYCKAVDRQL WPHQHPLRQF ERDLPSDILR KLEERRDDLD HLYEMEEKEI GALIRYNPGG
1201: RLVKQHLGYF PSIQLAATVS PITRTVLKVD LLITPNFIWK DRFHGTALRW WILIEDTEND YIYHSDLFTL TKRMARGEPQ KLSFTVPIFE PHPPQYYVHA
1301: VSDSWLHAET YFTISFHNLA LPEARTSHTE LLDLKPLPVT SLGNKLYESL YKFSHFNPIQ TQIFHVLYHT DNNVLVGAPT GSGKTISAEL AMLRLFSTQP
1401: DMKVVYIAPL KAIVRERMND WKKHLVAPLG KEMVEMTGDY TPDLVALLSA DIIISTPEKW DGISRNWHTR SYVKKVGLVI LDEIHLLGAD RGPILEVIVS
1501: RMRYISSQTE RSVRFVGLST ALANAGDLAD WLGVGEIGLF NFKPSVRPVP IEVHIQGYPG KYYCPRMNSM NKPAYAAICT HSPTKPVLIF VSSRRQTRLT
1601: ALDLIQFAAS DEHPRQFLSV SEEDLQMVLS QITDQNLRHT LQFGIGLHHA GLNDHDRSAV EELFTNNKIQ VLVSTSTLAW GVNLPAHLVI IKGTEYFDGK
1701: TKRYVDFPLT EILQMMGRAG RPQFDQHGKA VILVHEPKKS FYKKFLYEPF PVESSLKEKL HDHFNAEIVS GTIGNKEDAV HYLTWTYLFR RLMANPAYYG
1801: LEGTQDETIC SYLSRLVQTT FEDLEDSGCL KVNEDSVEPT MLGTIASQYY LCYMTVSMFG SNIGPDTSLE AFLHILAGAS EYDELPVRHN EENYNKTLSD
1901: RVRYPVDNNH LDDPHVKANL LFQAHFSQLA LPISDYNTDL KSVLDQSIRI LQAMIDICAN SGWLSSSLTC MRLLQMVMQG MWSDQDSSLW MIPCMNDLLL
2001: GSLTARGIHT LHQLLNLPRE TLQSVTENFP ASRLSQDLQR FPRIQMNVRL QKKDSDGKKK PSTLEIRLEK TSKRNSSRAL APRFPKVKDE AWWLVLGDTS
2101: TSELFAVKRV SFTGRLITRM ELPPNITSFQ DTKLILVSDC YLGFEQEHSI EQLARRG
Arabidopsis Description
BRR2CDExH-box ATP-dependent RNA helicase DExH14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNQ1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.