Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G223600.2 | Wheat | nucleus | 95.62 | 94.88 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 89.95 | 85.75 |
| HORVU1Hr1G060490.5 | Barley | plasma membrane | 80.41 | 69.03 |
| HORVU6Hr1G050500.2 | Barley | nucleus | 52.32 | 67.67 |
| HORVU6Hr1G050520.2 | Barley | nucleus | 39.43 | 64.56 |
| Zm00001d010048_P004 | Maize | nucleus | 51.29 | 54.22 |
| KXG21735 | Sorghum | nucleus | 46.91 | 54.17 |
| CDY36289 | Canola | nucleus | 27.06 | 36.08 |
| CDY67039 | Canola | nucleus | 27.06 | 35.96 |
| TraesCS2B01G529200.1 | Wheat | plastid | 17.78 | 35.75 |
| Bra034159.1-P | Field mustard | nucleus | 26.55 | 35.52 |
| TraesCS1B01G256000.1 | Wheat | nucleus | 20.88 | 35.22 |
| CDY00987 | Canola | nucleus | 27.32 | 34.08 |
| CDY08557 | Canola | nucleus | 27.58 | 34.08 |
| Bra029889.1-P | Field mustard | nucleus | 27.58 | 34.08 |
| Bra028759.1-P | Field mustard | nucleus | 26.03 | 33.11 |
| CDY52149 | Canola | nucleus | 27.06 | 32.01 |
| Bra005852.1-P | Field mustard | nucleus | 26.55 | 31.4 |
| CDY04950 | Canola | nucleus | 26.03 | 31.17 |
| AT5G05410.1 | Thale cress | nucleus | 26.55 | 30.75 |
| Bra009112.1-P | Field mustard | nucleus | 26.03 | 30.61 |
| CDX70151 | Canola | nucleus | 26.03 | 30.61 |
| CDX98843 | Canola | nucleus | 26.29 | 30.54 |
| AT3G11020.1 | Thale cress | nucleus | 24.74 | 29.09 |
| Bra001386.1-P | Field mustard | nucleus | 25.52 | 25.78 |
| CDX73896 | Canola | nucleus | 25.26 | 25.65 |
| TraesCS4B01G290100.1 | Wheat | nucleus | 18.3 | 22.54 |
| TraesCS1B01G236700.1 | Wheat | nucleus | 14.18 | 21.48 |
| TraesCS1B01G307000.1 | Wheat | nucleus | 18.56 | 18.7 |
| CDY00719 | Canola | nucleus | 5.93 | 9.7 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF16 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS1B01G235100 | EnsemblPlants:TraesCS1B01G235100.2 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr1B:-:421097071..421100427
Molecular Weight (calculated)
42219.2 Da
IEP (calculated)
4.756
GRAVY (calculated)
-0.585
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVDRKDAEA AAAAAAPFEI PALQPGRTCG AEESTRSHVL VKPIGSSNLP CNEYALLARQ NPKGDAQPVA SILRKKRPRR SRDGPNSVSE TIRRWKEVNQ
101: QLEHDPQGAK RARKPPAKGS KKGCMQGKGG PENTQCGFRG VRQRTWGKWV AEIREPNRVS RLWLGTFPTA EDAARAYDEA ARAMYGALAR TNFPVHPAQA
201: PAVAVAAAIE GVVRGASASC ESTTTSTNHS DVASSLPRQA QALEIYSQPD VLESTESVVL TPVEHYSHQD SVPDAGSSIA RSTSEEDVFE PLEPISSLPD
301: GESDGFDIEE LLRLMEADPI EVEPVNGGSW NGVEIGQQEP LYLDGLDQGM LEGMLQSDYP YPMWISEDRA MHNPAFHDAE MSEFFEGL
101: QLEHDPQGAK RARKPPAKGS KKGCMQGKGG PENTQCGFRG VRQRTWGKWV AEIREPNRVS RLWLGTFPTA EDAARAYDEA ARAMYGALAR TNFPVHPAQA
201: PAVAVAAAIE GVVRGASASC ESTTTSTNHS DVASSLPRQA QALEIYSQPD VLESTESVVL TPVEHYSHQD SVPDAGSSIA RSTSEEDVFE PLEPISSLPD
301: GESDGFDIEE LLRLMEADPI EVEPVNGGSW NGVEIGQQEP LYLDGLDQGM LEGMLQSDYP YPMWISEDRA MHNPAFHDAE MSEFFEGL
001: MPSEIVDRKR KSRGTRDVAE ILRQWREYNE QIEAESCIDG GGPKSIRKPP PKGSRKGCMK GKGGPENGIC DYRGVRQRRW GKWVAEIREP DGGARLWLGT
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ VKLEDCSDEY VLLDSSQCIK EELKGKEEVR
201: EEHNLAVGFG IGQDSKRETL DAWLMGNGNE QEPLEFGVDE TFDINELLGI LNDNNVSGQE TMQYQVDRHP NFSYQTQFPN SNLLGSLNPM EIAQPGVDYG
301: CPYVQPSDME NYGIDLDHRR FNDLDIQDLD FGGDKDVHGS T
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ VKLEDCSDEY VLLDSSQCIK EELKGKEEVR
201: EEHNLAVGFG IGQDSKRETL DAWLMGNGNE QEPLEFGVDE TFDINELLGI LNDNNVSGQE TMQYQVDRHP NFSYQTQFPN SNLLGSLNPM EIAQPGVDYG
301: CPYVQPSDME NYGIDLDHRR FNDLDIQDLD FGGDKDVHGS T
Arabidopsis Description
DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.