Factsheet for TraesCS6A01G202900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13430.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT5G13430.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT5G13430.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G187400.1	Wheat	mitochondrion	96.97	94.81
TraesCS6B01G229200.1	Wheat	mitochondrion	96.21	94.07
CDY09795	Canola	cytosol	47.35	92.59
Zm00001d016619_P001	Maize	mitochondrion	85.23	82.72
KXG30298	Sorghum	mitochondrion	84.47	81.99
TraesCS2A01G288200.1	Wheat	mitochondrion	83.33	80.59
Os02t0520800-01	Rice	mitochondrion	82.2	79.78
GSMUA_Achr3P19600_001	Banana	cytosol	65.15	76.44
CDX69642	Canola	mitochondrion	69.32	75.31
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	78.03	74.91
Solyc11g039840.1.1	Tomato	plastid	72.73	72.45
PGSC0003DMT400041105	Potato	mitochondrion	72.73	72.45
KRH08411	Soybean	mitochondrion	71.97	71.97
KRH70065	Soybean	nucleus	70.83	70.57
GSMUA_AchrUn_...	Banana	mitochondrion	73.48	70.55
GSMUA_Achr5P21560_001	Banana	mitochondrion	73.48	70.29
AT5G13430.1	Thale cress	mitochondrion	72.35	70.22
KRH70066	Soybean	mitochondrion	70.45	69.92
CDX91122	Canola	mitochondrion	71.59	69.74
CDX78521	Canola	mitochondrion	70.83	69.26
CDX70502	Canola	mitochondrion	71.59	69.23
CDX85651	Canola	mitochondrion	71.59	68.98
Bra006199.1-P	Field mustard	mitochondrion	71.59	68.98
CDX85650	Canola	mitochondrion	71.21	68.61
VIT_14s0068g01030.t01	Wine grape	mitochondrion	70.83	68.25
AT5G13440.1	Thale cress	mitochondrion	70.83	68.25
Bra023412.1-P	Field mustard	mitochondrion	70.83	68.25
Bra023411.1-P	Field mustard	mitochondrion	70.83	68.25
CDX78520	Canola	mitochondrion	71.21	68.12
CDX70503	Canola	mitochondrion	70.83	68.0
CDY09798	Canola	mitochondrion	69.7	67.9
CDY16491	Canola	mitochondrion	69.7	67.65
Bra008830.1-P	Field mustard	mitochondrion	69.7	67.65
Bra006198.1-P	Field mustard	mitochondrion	70.08	66.79
CDX91123	Canola	cytosol	71.59	43.15

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016491	GO:GO:0016679	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922
PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022
SUPFAM:SSF81502	TIGRFAMs:TIGR01416	EnsemblPlantsGene:TraesCS6A01G202900	EnsemblPlants:TraesCS6A01G202900.1	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	TIGR:cd03470
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:340906089..340919852

Molecular Weight (calculated)

29054.8 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.141

Length

264 amino acids

Sequence
(BLAST)

001: MLRVAGRHIS SHLAWRPAAA ASAGGLPGDD FPRDQNPRFA IESPFYVAAR GFSVESLVPR NQDGELAELT PTTAALKNAC AKIVYDEYNH ERYPPGDPSK
101: RAFAYFVLSG GRFVYASLLR LLVLKFVLSM SASKDVLALA SLEVDLSSIE PGTTVTVKWR GKPVFIRRRT EDDVKLANSV DVTSLRDPQE DAMRVKNPEW
201: LVVIGVCTHL GCIPLPNSGD FGGWFCPCHG SHYDISGRIR KGPAPYNLEV PTYSFLEDNK MLIG

Best Arabidopsis Sequence Match ( AT5G13440.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVLSRDHTL SDGGNSSSAS RSVPSADLSS FNSYHRSVIR GFASQVITQG NEIGFGSEVP ATVEAVKTPN SKIVYDDHNH
101: ERYPPGDPSK RAFAYFVLSG GRFVYASVLR LLVLKLIVSM SASKDVLALA SLEVDLGSIE PGTTVTVKWR GKPVFIRRRT EDDIKLANSV DVGSLRDPQE
201: DSVRVKNPEW LIVVGVCTHL GCIPLPNAGD YGGWFCPCHG SHYDISGRIR KGPAPYNLEV PTYSFLEENK LLIG

Arabidopsis Description

UCR1-2Cytochrome b-c1 complex subunit Rieske-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.