CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70066	Soybean	mitochondrion	96.6	96.24
KRH08411	Soybean	mitochondrion	93.21	93.56
CDY09795	Canola	cytosol	47.17	92.59
GSMUA_Achr3P19600_001	Banana	cytosol	66.42	78.22
CDX69642	Canola	mitochondrion	70.19	76.54
PGSC0003DMT400041105	Potato	mitochondrion	73.58	73.58
Solyc11g039840.1.1	Tomato	plastid	73.58	73.58
VIT_14s0068g01030.t01	Wine grape	mitochondrion	75.85	73.36
EES10690	Sorghum	mitochondrion	73.21	71.85
Zm00001d025286_P001	Maize	mitochondrion	73.58	71.43
Zm00001d016619_P001	Maize	mitochondrion	73.21	71.32
TraesCS6A01G202900.1	Wheat	mitochondrion	70.57	70.83
TraesCS6B01G229200.1	Wheat	mitochondrion	72.08	70.74
TraesCS6D01G187400.1	Wheat	mitochondrion	72.08	70.74
Os02t0520800-01	Rice	mitochondrion	72.08	70.22
KXG30298	Sorghum	mitochondrion	72.08	70.22
AT5G13430.1	Thale cress	mitochondrion	72.08	70.22
GSMUA_AchrUn_...	Banana	mitochondrion	72.83	70.18
CDX78521	Canola	mitochondrion	71.32	70.0
CDX70502	Canola	mitochondrion	72.08	69.96
CDY09798	Canola	mitochondrion	71.32	69.74
AT5G13440.1	Thale cress	mitochondrion	72.08	69.71
CDX85651	Canola	mitochondrion	72.08	69.71
Bra008830.1-P	Field mustard	mitochondrion	71.32	69.49
CDY16491	Canola	mitochondrion	71.32	69.49
CDX91122	Canola	mitochondrion	70.94	69.37
Bra006199.1-P	Field mustard	mitochondrion	71.7	69.34
CDX78520	Canola	mitochondrion	72.08	69.2
Os04t0398500-01	Rice	mitochondrion	72.45	69.06
CDX85650	Canola	mitochondrion	71.32	68.98
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	70.94	68.86
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	70.94	68.86
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	70.94	68.86
TraesCS2A01G288200.1	Wheat	mitochondrion	70.94	68.86
CDX70503	Canola	mitochondrion	71.32	68.73
Bra023412.1-P	Field mustard	mitochondrion	70.94	68.61
Bra023411.1-P	Field mustard	mitochondrion	70.94	68.61
GSMUA_Achr5P21560_001	Banana	mitochondrion	71.32	68.48
Bra006198.1-P	Field mustard	mitochondrion	70.57	67.51
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	67.55	65.09
TraesCS7B01G151800.1	Wheat	mitochondrion	65.66	63.97
CDX91123	Canola	cytosol	72.08	43.61

Protein Annotations

KEGG:00190+1.10.2.2	EntrezGene:100798615	Gene3D:2.102.10.10	MapMan:2.4.3.4	EMBL:ACUP02000745	EMBL:BT097443
UniProt:C6TIG2	EnsemblPlantsGene:GLYMA_02G066400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006091	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0051537	GO:GO:0055114
GO:GO:0070469	GO:GO:1902600	InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH70065	ProteinID:KRH70065
ProteinID:KRH70065.1	PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134
PANTHER:PTHR10134:SF17	MetaCyc:PWY-3781	MetaCyc:PWY-6692	MetaCyc:PWY-7082	MetaCyc:PWY-7279	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502
TIGRFAMs:TIGR01416	UniParc:UPI0001B16B97	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:5897892..5901262

Molecular Weight (calculated)

29208.1 Da

IEP (calculated)

8.624

GRAVY (calculated)

-0.093

Length

265 amino acids

Sequence
(BLAST)

001: MLRVAARRLS SLSSSSPLRP NHAASAFLSR NDVVVDDHRS VPSSHPLLPF RGFATESLIH PIENSIIPQI LPTVTAVKNP TSKIVYDDHN HERFPPGDPS
101: KRAFAYFVLT GGRFAYASLV RLLVLKFVLS MSASKDVLAL ASLEVDLSSI EPGTTVTVKW RGKPVFIRRR TEDDIKLANS VDVGSLRDPQ PDADRVKDPE
201: WLIVIGVCTH LGCIPLPNAG DFGGWFCPCH GSHYDISGRI RKGPAPYNLE VPTYTFLEEN KLMIG

Best Arabidopsis Sequence Match ( AT5G13440.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVLSRDHTL SDGGNSSSAS RSVPSADLSS FNSYHRSVIR GFASQVITQG NEIGFGSEVP ATVEAVKTPN SKIVYDDHNH
101: ERYPPGDPSK RAFAYFVLSG GRFVYASVLR LLVLKLIVSM SASKDVLALA SLEVDLGSIE PGTTVTVKWR GKPVFIRRRT EDDIKLANSV DVGSLRDPQE
201: DSVRVKNPEW LIVVGVCTHL GCIPLPNAGD YGGWFCPCHG SHYDISGRIR KGPAPYNLEV PTYSFLEENK LLIG

Arabidopsis Description

UCR1-2Cytochrome b-c1 complex subunit Rieske-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.