Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 7
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G221900.1 | |
| TraesCS1B01G235100.2 | |
| TraesCS1D01G223600.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13430.1 | TraesCS1A01G221900.1 | AT5G05410.1 | 18552202 |
| AT5G13430.1 | TraesCS1B01G235100.2 | AT5G05410.1 | 18552202 |
| AT5G13430.1 | TraesCS1D01G223600.2 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G229200.1 | Wheat | mitochondrion | 99.26 | 99.26 |
| TraesCS6A01G202900.1 | Wheat | mitochondrion | 94.81 | 96.97 |
| CDY09795 | Canola | cytosol | 46.67 | 93.33 |
| Zm00001d016619_P001 | Maize | mitochondrion | 86.3 | 85.66 |
| KXG30298 | Sorghum | mitochondrion | 85.19 | 84.56 |
| TraesCS2D01G286500.1 | Wheat | golgi, mitochondrion | 83.33 | 82.42 |
| Os02t0520800-01 | Rice | mitochondrion | 82.59 | 81.99 |
| GSMUA_Achr3P19600_001 | Banana | cytosol | 64.07 | 76.89 |
| HORVU6Hr1G051210.7 | Barley | endoplasmic reticulum | 78.15 | 76.73 |
| CDX69642 | Canola | mitochondrion | 68.52 | 76.13 |
| Solyc11g039840.1.1 | Tomato | plastid | 71.85 | 73.21 |
| PGSC0003DMT400041105 | Potato | mitochondrion | 71.85 | 73.21 |
| KRH08411 | Soybean | mitochondrion | 71.48 | 73.11 |
| KRH70065 | Soybean | nucleus | 70.74 | 72.08 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 73.33 | 72.0 |
| KRH70066 | Soybean | mitochondrion | 70.37 | 71.43 |
| GSMUA_Achr5P21560_001 | Banana | mitochondrion | 72.96 | 71.38 |
| AT5G13430.1 | Thale cress | mitochondrion | 71.85 | 71.32 |
| CDX91122 | Canola | mitochondrion | 71.48 | 71.22 |
| CDX70502 | Canola | mitochondrion | 71.11 | 70.33 |
| CDX85651 | Canola | mitochondrion | 71.11 | 70.07 |
| Bra006199.1-P | Field mustard | mitochondrion | 71.11 | 70.07 |
| CDX78521 | Canola | mitochondrion | 70.0 | 70.0 |
| CDX85650 | Canola | mitochondrion | 70.74 | 69.71 |
| VIT_14s0068g01030.t01 | Wine grape | mitochondrion | 70.74 | 69.71 |
| CDY09798 | Canola | mitochondrion | 69.63 | 69.37 |
| Bra023412.1-P | Field mustard | mitochondrion | 70.37 | 69.34 |
| AT5G13440.1 | Thale cress | mitochondrion | 70.37 | 69.34 |
| CDX78520 | Canola | mitochondrion | 70.74 | 69.2 |
| CDY16491 | Canola | mitochondrion | 69.63 | 69.12 |
| Bra008830.1-P | Field mustard | mitochondrion | 69.63 | 69.12 |
| CDX70503 | Canola | mitochondrion | 70.37 | 69.09 |
| Bra023411.1-P | Field mustard | mitochondrion | 70.0 | 68.98 |
| Bra006198.1-P | Field mustard | mitochondrion | 69.63 | 67.87 |
| CDX91123 | Canola | cytosol | 71.48 | 44.06 |
Protein Annotations
| KEGG:00190+1.10.2.2 | Gene3D:2.102.10.10 | MapMan:2.4.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008121 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0016491 | GO:GO:0016679 | GO:GO:0051537 | GO:GO:0055114 | InterPro:IPR017941 | InterPro:IPR036922 |
| PFAM:PF00355 | PFAM:PF02921 | PRINTS:PR00162 | PFscan:PS51296 | PANTHER:PTHR10134 | PANTHER:PTHR10134:SF17 |
| InterPro:Rieske_2Fe-2S | InterPro:Rieske_2Fe-2S_sf | InterPro:Rieske_Fe-S_prot | InterPro:Rieske_Fe-S_prot_C | InterPro:Rieske_TM | SUPFAM:SSF50022 |
| SUPFAM:SSF81502 | TIGRFAMs:TIGR01416 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6D01G187400 | EnsemblPlants:TraesCS6D01G187400.1 | InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su |
| TIGR:cd03470 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:252570465..252576563
Molecular Weight (calculated)
29594.4 Da
IEP (calculated)
8.201
GRAVY (calculated)
-0.131
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRVAGRRIS SHLAWRPAAA ASAGSSPLAG GLPGDDFPRD QNPRFAIESP FYVAARGFSA ESLVPRNQDV ELAELTPTTA ALKNPCAKIV YDEYNHERYP
101: PGDPSKRAFA YFVLSGGRFV YASLLRLLVL KFVLSMSASK DVLALASLEV DLSSIEPGTT VTVKWRGKPV FIRRRTEDDV KLANSVDVTS LRDPQEDAVR
201: VKNPEWLVVI GVCTHLGCIP LPNSGDFGGW FCPCHGSHYD ISGRIRKGPA PYNLEVPTYS FLEDNKMLIG
101: PGDPSKRAFA YFVLSGGRFV YASLLRLLVL KFVLSMSASK DVLALASLEV DLSSIEPGTT VTVKWRGKPV FIRRRTEDDV KLANSVDVTS LRDPQEDAVR
201: VKNPEWLVVI GVCTHLGCIP LPNSGDFGGW FCPCHGSHYD ISGRIRKGPA PYNLEVPTYS FLEDNKMLIG
001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG
Arabidopsis Description
UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.