Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13430.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT5G13430.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT5G13430.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT5G13430.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69642 | Canola | mitochondrion | 99.26 | 55.14 |
| GSMUA_Achr3P19600_001 | Banana | cytosol | 88.15 | 52.89 |
| CDX78521 | Canola | mitochondrion | 100.0 | 50.0 |
| CDY09798 | Canola | mitochondrion | 100.0 | 49.82 |
| CDX70502 | Canola | mitochondrion | 100.0 | 49.45 |
| CDX91122 | Canola | mitochondrion | 99.26 | 49.45 |
| CDY16491 | Canola | mitochondrion | 99.26 | 49.26 |
| CDX70503 | Canola | mitochondrion | 100.0 | 49.09 |
| CDX85650 | Canola | mitochondrion | 99.26 | 48.91 |
| CDX85651 | Canola | mitochondrion | 99.26 | 48.91 |
| AT5G13430.1 | Thale cress | mitochondrion | 98.52 | 48.9 |
| CDX78520 | Canola | mitochondrion | 99.26 | 48.55 |
| Solyc11g039840.1.1 | Tomato | plastid | 94.81 | 48.3 |
| PGSC0003DMT400041105 | Potato | mitochondrion | 94.81 | 48.3 |
| AT5G13440.1 | Thale cress | mitochondrion | 97.78 | 48.18 |
| TraesCS6A01G202900.1 | Wheat | mitochondrion | 92.59 | 47.35 |
| KRH08411 | Soybean | mitochondrion | 92.59 | 47.35 |
| KRH70065 | Soybean | nucleus | 92.59 | 47.17 |
| KRH70066 | Soybean | mitochondrion | 92.59 | 46.99 |
| Os02t0520800-01 | Rice | mitochondrion | 94.07 | 46.69 |
| TraesCS6D01G187400.1 | Wheat | mitochondrion | 93.33 | 46.67 |
| TraesCS6B01G229200.1 | Wheat | mitochondrion | 93.33 | 46.67 |
| EES10690 | Sorghum | mitochondrion | 92.59 | 46.3 |
| Zm00001d016619_P001 | Maize | mitochondrion | 92.59 | 45.96 |
| VIT_01s0150g00160.t01 | Wine grape | mitochondrion | 92.59 | 45.96 |
| HORVU6Hr1G051210.7 | Barley | endoplasmic reticulum | 93.33 | 45.82 |
| Zm00001d025286_P001 | Maize | mitochondrion | 91.85 | 45.42 |
| Os04t0398500-01 | Rice | mitochondrion | 93.33 | 45.32 |
| KXG30298 | Sorghum | mitochondrion | 91.11 | 45.22 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 90.37 | 44.36 |
| TraesCS2A01G288200.1 | Wheat | mitochondrion | 89.63 | 44.32 |
| TraesCS2B01G305000.1 | Wheat | golgi, mitochondrion, unclear | 89.63 | 44.32 |
| TraesCS2D01G286500.1 | Wheat | golgi, mitochondrion | 89.63 | 44.32 |
| HORVU2Hr1G071350.1 | Barley | mitochondrion, plasma membrane | 89.63 | 44.32 |
| GSMUA_Achr5P21560_001 | Banana | mitochondrion | 89.63 | 43.84 |
| VIT_14s0068g01030.t01 | Wine grape | mitochondrion | 87.41 | 43.07 |
| TraesCS7B01G151800.1 | Wheat | mitochondrion | 82.96 | 41.18 |
| CDX91123 | Canola | cytosol | 99.26 | 30.59 |
Protein Annotations
| KEGG:00190+1.10.2.2 | Gene3D:2.102.10.10 | MapMan:2.4.3.4 | GO:A0A078F5S2 | UniProt:A0A078F5S2 | EnsemblPlants:CDY09795 |
| ProteinID:CDY09795 | ProteinID:CDY09795.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 |
| GO:GO:0006091 | GO:GO:0006810 | GO:GO:0008121 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016491 | GO:GO:0016679 | GO:GO:0022900 | GO:GO:0051537 | GO:GO:0055114 |
| GO:GO:0070469 | GO:GO:1902600 | EnsemblPlantsGene:GSBRNA2T00031507001 | InterPro:IPR017941 | InterPro:IPR036922 | PFAM:PF00355 |
| PRINTS:PR00162 | PFscan:PS51296 | PANTHER:PTHR10134 | PANTHER:PTHR10134:SF17 | MetaCyc:PWY-3781 | MetaCyc:PWY-6692 |
| MetaCyc:PWY-7082 | MetaCyc:PWY-7279 | InterPro:Rieske_2Fe-2S | InterPro:Rieske_2Fe-2S_sf | InterPro:Rieske_Fe-S_prot | InterPro:Rieske_Fe-S_prot_C |
| SUPFAM:SSF50022 | TIGRFAMs:TIGR01416 | UniParc:UPI0001BA4613 | InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su | : | : |
Description
BnaC09g43660DCytochrome b-c1 complex subunit Rieske, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078F5S2]
Coordinates
chrLK031999:-:155693..156261
Molecular Weight (calculated)
14806.8 Da
IEP (calculated)
6.245
GRAVY (calculated)
-0.161
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASKDVLAL ASLEVDLGSI EPGTTVTVKW RGKPVFIRRR TEDDIKLANS VDLGSLRDPQ EDAVRVKNPE WLVVVGVCTH LGCIPLPNAG DYGGWFCPCH
101: GSHYDISGRI RKGPAPYNLE VPTYSFLEEN KLLIG
101: GSHYDISGRI RKGPAPYNLE VPTYSFLEEN KLLIG
001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS
Arabidopsis Description
PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.