CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13430.1	CDX70151	AT5G05410.1	18552202
AT5G13430.1	CDX98843	AT5G05410.1	18552202
AT5G13430.1	CDY04950	AT5G05410.1	18552202
AT5G13430.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09795	Canola	cytosol	30.59	99.26
CDX85651	Canola	mitochondrion	61.87	98.91
Bra023411.1-P	Field mustard	mitochondrion	60.73	97.08
CDX70502	Canola	mitochondrion	59.36	95.24
CDX78520	Canola	mitochondrion	59.59	94.57
CDX69642	Canola	mitochondrion	52.05	93.83
AT5G13440.1	Thale cress	mitochondrion	58.22	93.07
AT5G13430.1	Thale cress	mitochondrion	57.76	93.01
CDX70503	Canola	mitochondrion	57.76	92.0
CDX91122	Canola	mitochondrion	56.85	91.88
CDX85650	Canola	mitochondrion	57.08	91.24
CDY09798	Canola	mitochondrion	55.48	89.67
CDX78521	Canola	mitochondrion	55.25	89.63
CDY16491	Canola	mitochondrion	55.48	89.34
GSMUA_Achr3P19600_001	Banana	cytosol	39.27	76.44
Solyc11g039840.1.1	Tomato	plastid	45.66	75.47
PGSC0003DMT400041105	Potato	mitochondrion	45.66	75.47
EES10690	Sorghum	mitochondrion	45.21	73.33
VIT_01s0150g00160.t01	Wine grape	mitochondrion	45.43	73.16
Os02t0520800-01	Rice	mitochondrion	45.21	72.79
KRH70066	Soybean	mitochondrion	43.84	72.18
KRH70065	Soybean	nucleus	43.61	72.08
Zm00001d025286_P001	Maize	mitochondrion	44.75	71.79
Zm00001d016619_P001	Maize	mitochondrion	44.52	71.69
KRH08411	Soybean	mitochondrion	43.15	71.59
TraesCS6A01G202900.1	Wheat	mitochondrion	43.15	71.59
TraesCS6D01G187400.1	Wheat	mitochondrion	44.06	71.48
TraesCS6B01G229200.1	Wheat	mitochondrion	43.84	71.11
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	44.06	70.7
TraesCS2A01G288200.1	Wheat	mitochondrion	44.06	70.7
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	44.06	70.7
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	44.06	70.7
KXG30298	Sorghum	mitochondrion	43.84	70.59
Os04t0398500-01	Rice	mitochondrion	44.52	70.14
GSMUA_AchrUn_...	Banana	mitochondrion	43.84	69.82
GSMUA_Achr5P21560_001	Banana	mitochondrion	43.61	69.2
VIT_14s0068g01030.t01	Wine grape	mitochondrion	42.47	67.88
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	41.78	66.55
TraesCS7B01G151800.1	Wheat	mitochondrion	40.18	64.71

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	GO:A0A078DV93	EnsemblPlants:CDX91123	ProteinID:CDX91123
ProteinID:CDX91123.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0016679
GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00151910001	InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355
PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17	MetaCyc:PWY-3781
MetaCyc:PWY-6692	MetaCyc:PWY-7082	MetaCyc:PWY-7279	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot
InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416	UniParc:UPI0004EF0CB5
InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	SEG:seg	:	:	:	:

Description

BnaC02g04740D

Coordinates

chrLK031865:+:874922..877561

Molecular Weight (calculated)

49122.6 Da

IEP (calculated)

7.839

GRAVY (calculated)

-0.274

Length

438 amino acids

Sequence
(BLAST)

001: MDQNFHEEED IMMDIDQTNN DDFDASLFLM VVMVAIGAQF QNSRKRIMGQ HFIERPLRRP VTNLGEQYIQ KVLKEDSQHF RVLYRMFPDV FLKLSSILRE
101: KAGLQDTRFI SVEEMLAIFM LTVGQNSRYC SVKDTFKRSK FAISTSFNQC FESFTCHSSK PNAEMLRVAG RRLFSLSQRS STATSFALSR DHSLSDGGGD
201: SSSPPRSVPS TNLSPFDSYH RSLIRGFSSQ VLTQGNEVGF GSEPATVEAV KTPNSKIVYD DHNHERYPPG DPSKRAFAYF VLSGGRFVYA SVLRLLVLKL
301: IVSMSASKDV LALASLEVDL GSIEPGTTVT VKWRGKPVFI RRRTEDDIKL ANSVDLGSLR DPQEDSVRVK NPEWLVVVGV CTHLGCIPLP NAGDYGGWFC
401: PCHGSHYDIS GRIRKGPAPY NLEVPTYSFL EENKLLIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.