CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70065	Soybean	nucleus	93.56	93.21
CDY09795	Canola	cytosol	47.35	92.59
KRH70066	Soybean	mitochondrion	92.8	92.11
GSMUA_Achr3P19600_001	Banana	cytosol	67.8	79.56
CDX69642	Canola	mitochondrion	70.45	76.54
VIT_14s0068g01030.t01	Wine grape	mitochondrion	77.27	74.45
EES10690	Sorghum	mitochondrion	75.0	73.33
PGSC0003DMT400041105	Potato	mitochondrion	73.11	72.83
Solyc11g039840.1.1	Tomato	plastid	73.11	72.83
Zm00001d016619_P001	Maize	mitochondrion	75.0	72.79
TraesCS6A01G202900.1	Wheat	mitochondrion	71.97	71.97
Zm00001d025286_P001	Maize	mitochondrion	74.24	71.79
Os02t0520800-01	Rice	mitochondrion	73.86	71.69
TraesCS6B01G229200.1	Wheat	mitochondrion	73.11	71.48
TraesCS6D01G187400.1	Wheat	mitochondrion	73.11	71.48
GSMUA_AchrUn_...	Banana	mitochondrion	74.24	71.27
KXG30298	Sorghum	mitochondrion	73.11	70.96
Os04t0398500-01	Rice	mitochondrion	74.24	70.5
AT5G13440.1	Thale cress	mitochondrion	73.11	70.44
AT5G13430.1	Thale cress	mitochondrion	72.35	70.22
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	72.35	69.96
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	72.35	69.96
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	72.35	69.96
TraesCS2A01G288200.1	Wheat	mitochondrion	72.35	69.96
CDX70502	Canola	mitochondrion	72.35	69.96
CDY09798	Canola	mitochondrion	71.59	69.74
CDX91122	Canola	mitochondrion	71.59	69.74
CDX78521	Canola	mitochondrion	71.21	69.63
GSMUA_Achr5P21560_001	Banana	mitochondrion	72.73	69.57
Bra008830.1-P	Field mustard	mitochondrion	71.59	69.49
CDY16491	Canola	mitochondrion	71.59	69.49
CDX70503	Canola	mitochondrion	71.97	69.09
CDX85651	Canola	mitochondrion	71.59	68.98
Bra006199.1-P	Field mustard	mitochondrion	71.59	68.98
CDX78520	Canola	mitochondrion	71.97	68.84
CDX85650	Canola	mitochondrion	71.21	68.61
Bra023412.1-P	Field mustard	mitochondrion	70.83	68.25
Bra023411.1-P	Field mustard	mitochondrion	70.45	67.88
Bra006198.1-P	Field mustard	mitochondrion	70.83	67.51
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	68.94	66.18
TraesCS7B01G151800.1	Wheat	mitochondrion	67.42	65.44
CDX91123	Canola	cytosol	71.59	43.15

Protein Annotations

KEGG:00190+1.10.2.2	EntrezGene:100806917	Gene3D:2.102.10.10	MapMan:2.4.3.4	EMBL:ACUP02010169	EMBL:BT097241
UniProt:C6THW5	EnsemblPlantsGene:GLYMA_16G147600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006091	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0051537	GO:GO:0055114
GO:GO:0070469	GO:GO:1902600	InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH08411	ProteinID:KRH08411
ProteinID:KRH08411.1	PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134
PANTHER:PTHR10134:SF17	MetaCyc:PWY-3781	MetaCyc:PWY-6692	MetaCyc:PWY-7082	MetaCyc:PWY-7279	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502
TIGRFAMs:TIGR01416	UniParc:UPI0001B16872	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:30845527..30848085

Molecular Weight (calculated)

29198.0 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.146

Length

264 amino acids

Sequence
(BLAST)

001: MLRVAARRLS SLSSSSPWRP NHAASAYVSR NAVVDDRRSD PSSHPLFPFR GFATESLIHP IENSIIPEIP ATVTAVKNPT SKIVYDEHNH ERFPPGDPSK
101: RAFAYFVLTG GRFAYASLVR LLVLKFVLSM SASKDVLALA SLEVDLSSIE PGTTVTVKWR GKPVFIRRRT EDDIKLANSV DVGSLRDPQL DADRVKDPEW
201: LIVIGVCTHL GCIPLPNAGD FGGWFCPCHG SHYDISGRIR KGPAPYNLEV PTYTFLEENK LMIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.