Factsheet for Bra006198.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005852.1-P
Bra009112.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13430.1	Bra005852.1-P	AT5G05410.1	18552202
AT5G13430.1	Bra009112.1-P	AT5G05410.1	18552202
AT5G13430.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78520	Canola	mitochondrion	97.83	98.19
Bra023411.1-P	Field mustard	mitochondrion	92.78	93.8
AT5G13440.1	Thale cress	mitochondrion	90.97	91.97
AT5G13430.1	Thale cress	mitochondrion	89.53	91.18
Bra006199.1-P	Field mustard	mitochondrion	89.53	90.51
Bra023412.1-P	Field mustard	mitochondrion	88.09	89.05
Bra008830.1-P	Field mustard	mitochondrion	87.0	88.6
GSMUA_Achr3P19600_001	Banana	cytosol	61.01	75.11
PGSC0003DMT400041105	Potato	mitochondrion	69.68	72.83
Solyc11g039840.1.1	Tomato	plastid	69.68	72.83
EES10690	Sorghum	mitochondrion	69.68	71.48
VIT_01s0150g00160.t01	Wine grape	mitochondrion	69.68	70.96
Os02t0520800-01	Rice	mitochondrion	69.68	70.96
KRH08411	Soybean	mitochondrion	67.51	70.83
KRH70066	Soybean	mitochondrion	67.87	70.68
Zm00001d016619_P001	Maize	mitochondrion	69.31	70.59
KRH70065	Soybean	nucleus	67.51	70.57
TraesCS6A01G202900.1	Wheat	mitochondrion	66.79	70.08
TraesCS6D01G187400.1	Wheat	mitochondrion	67.87	69.63
Zm00001d025286_P001	Maize	mitochondrion	68.59	69.6
TraesCS6B01G229200.1	Wheat	mitochondrion	67.51	69.26
TraesCS2A01G288200.1	Wheat	mitochondrion	68.23	69.23
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	68.23	69.23
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	68.23	69.23
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	68.23	69.23
KXG30298	Sorghum	mitochondrion	67.51	68.75
GSMUA_AchrUn_...	Banana	mitochondrion	68.23	68.73
GSMUA_Achr5P21560_001	Banana	mitochondrion	68.23	68.48
Os04t0398500-01	Rice	mitochondrion	68.59	68.35
VIT_14s0068g01030.t01	Wine grape	mitochondrion	66.06	66.79
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	65.7	66.18
TraesCS7B01G151800.1	Wheat	mitochondrion	63.54	64.71

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	EnsemblPlantsGene:Bra006198	EnsemblPlants:Bra006198.1	EnsemblPlants:Bra006198.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006810
GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491
GO:GO:0016679	GO:GO:0022900	GO:GO:0051537	GO:GO:0055114	GO:GO:0070469	GO:GO:1902600
InterPro:IPR017941	InterPro:IPR036922	UniProt:M4CPQ9	PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162
PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot
InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416	UniParc:UPI000253FA5A
InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	SEG:seg	:	:	:	:

Description

AT5G13440 (E=3e-137) | ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative

Coordinates

chrA03:-:2482444..2483924

Molecular Weight (calculated)

30099.8 Da

IEP (calculated)

9.330

GRAVY (calculated)

-0.192

Length

277 amino acids

Sequence
(BLAST)

001: MLRVAGRRLF SVSQRSTNAT SFALSRDHTL SDGGGNSSSS SSATRSVPSP ALSRFGSYHR SLVRGFSSQV LTQGNEVGFG SEPATVEAVK TPNSKIVYDD
101: HNHERYPPGD PSKRAFAYFV LSGGRFVYAS VLRLLVLKLI VSMSASKDVL ALASLEVDLG SIEPGTTVAV KWRGKPAFIR RRTEDDIKLA NIVDLGSLRD
201: PQEDSVRVKN PEWLVVVGVC THLGCIPLPN AGDYGGWFCP CHGSHYDISG RIRKGPAPYN LEVPTYSFLE ENKLLIG

Best Arabidopsis Sequence Match ( AT5G13440.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVLSRDHTL SDGGNSSSAS RSVPSADLSS FNSYHRSVIR GFASQVITQG NEIGFGSEVP ATVEAVKTPN SKIVYDDHNH
101: ERYPPGDPSK RAFAYFVLSG GRFVYASVLR LLVLKLIVSM SASKDVLALA SLEVDLGSIE PGTTVTVKWR GKPVFIRRRT EDDIKLANSV DVGSLRDPQE
201: DSVRVKNPEW LIVVGVCTHL GCIPLPNAGD YGGWFCPCHG SHYDISGRIR KGPAPYNLEV PTYSFLEENK LLIG

Arabidopsis Description

UCR1-2Cytochrome b-c1 complex subunit Rieske-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.