Factsheet for VIT_01s0150g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09795	Canola	cytosol	45.96	92.59
Solyc11g039840.1.1	Tomato	plastid	77.21	79.25
PGSC0003DMT400041105	Potato	mitochondrion	77.21	79.25
CDX69642	Canola	mitochondrion	69.49	77.78
AT5G13430.1	Thale cress	mitochondrion	73.53	73.53
VIT_14s0068g01030.t01	Wine grape	mitochondrion	73.53	72.99
CDX70503	Canola	mitochondrion	73.53	72.73
Bra006199.1-P	Field mustard	mitochondrion	72.79	72.26
CDX85651	Canola	mitochondrion	72.79	72.26
CDX70502	Canola	mitochondrion	72.43	72.16
CDX91122	Canola	mitochondrion	71.69	71.96
CDX78521	Canola	mitochondrion	71.32	71.85
CDY09798	Canola	mitochondrion	71.32	71.59
CDX85650	Canola	mitochondrion	72.06	71.53
AT5G13440.1	Thale cress	mitochondrion	72.06	71.53
Bra023412.1-P	Field mustard	mitochondrion	71.69	71.17
Bra023411.1-P	Field mustard	mitochondrion	71.69	71.17
Bra008830.1-P	Field mustard	mitochondrion	70.96	70.96
CDX78520	Canola	mitochondrion	71.69	70.65
CDY16491	Canola	mitochondrion	70.59	70.59
Bra006198.1-P	Field mustard	mitochondrion	70.96	69.68
CDX91123	Canola	cytosol	73.16	45.43

Protein Annotations

KEGG:00190+1.10.2.2	EntrezGene:100257494	wikigene:100257494	Gene3D:2.102.10.10	MapMan:2.4.3.4	EMBL:AM478536
ProteinID:CAN59729	ProteinID:CAN59729.1	ProteinID:CBI29264	ProteinID:CBI29264.3	UniProt:D7TFJ1	EMBL:FN595770
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006810
GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0051537	GO:GO:0055114	GO:GO:0070469
GO:GO:1902600	InterPro:IPR017941	InterPro:IPR036922	EntrezGene:LOC100257494	wikigene:LOC100257494	PFAM:PF00355
PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502
TIGR:TC56060	TIGR:TC60094	TIGR:TC65041	TIGRFAMs:TIGR01416	TMHMM:TMhelix	UniParc:UPI00015CD1A6
InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	ArrayExpress:VIT_01s0150g00160	EnsemblPlantsGene:VIT_01s0150g00160	EnsemblPlants:VIT_01s0150g00160.t01	unigene:Vvi.689	RefSeq:XP_002271311
RefSeq:XP_002271311.1	SEG:seg	:	:	:	:

Description

Cytochrome b-c1 complex subunit Rieske, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D7TFJ1]

Coordinates

chr1:+:22603189..22607749

Molecular Weight (calculated)

29737.5 Da

IEP (calculated)

8.622

GRAVY (calculated)

-0.129

Length

272 amino acids

Sequence
(BLAST)

001: MLRVAGRRLS SLSRWSPSSA PASSALLSRI HSSNGGDGSS RSISSPHLFN SEFRDLIRGF SSESLAPSHD LGMISDLPPT VAALKNPTSK IVYDDHNHER
101: FPPGDPSKRA FAYFVLTGGR FIYASLIRLL VLKFVLSMSA SKDVLALASI EVDLSSIEPG STVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDA
201: VRVKDPEWLI VIGVCTHLGC IPLPNAGDFG GWFCPCHGSH YDVSGRIRKG PAPYNLEVPT YSFLEENKLM IG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.