CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13430.1	CDX70151	AT5G05410.1	18552202
AT5G13430.1	CDX98843	AT5G05410.1	18552202
AT5G13430.1	CDY04950	AT5G05410.1	18552202
AT5G13430.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09795	Canola	cytosol	49.82	100.0
CDX69642	Canola	mitochondrion	86.72	96.71
CDY16491	Canola	mitochondrion	95.57	95.22
CDX91122	Canola	mitochondrion	91.14	91.14
CDX85650	Canola	mitochondrion	91.88	90.88
CDX70503	Canola	mitochondrion	91.88	90.55
AT5G13440.1	Thale cress	mitochondrion	91.14	90.15
CDX78521	Canola	mitochondrion	89.67	90.0
CDX70502	Canola	mitochondrion	89.67	89.01
CDX85651	Canola	mitochondrion	89.67	88.69
AT5G13430.1	Thale cress	mitochondrion	88.93	88.6
CDX78520	Canola	mitochondrion	89.67	88.04
GSMUA_Achr3P19600_001	Banana	cytosol	63.84	76.89
Solyc11g039840.1.1	Tomato	plastid	72.32	73.96
PGSC0003DMT400041105	Potato	mitochondrion	72.32	73.96
KRH70066	Soybean	mitochondrion	70.85	72.18
KRH08411	Soybean	mitochondrion	69.74	71.59
EES10690	Sorghum	mitochondrion	71.22	71.48
VIT_01s0150g00160.t01	Wine grape	mitochondrion	71.59	71.32
KRH70065	Soybean	nucleus	69.74	71.32
Os02t0520800-01	Rice	mitochondrion	71.22	70.96
Zm00001d016619_P001	Maize	mitochondrion	70.85	70.59
TraesCS6A01G202900.1	Wheat	mitochondrion	67.9	69.7
TraesCS6D01G187400.1	Wheat	mitochondrion	69.37	69.63
Zm00001d025286_P001	Maize	mitochondrion	70.11	69.6
TraesCS6B01G229200.1	Wheat	mitochondrion	69.0	69.26
TraesCS2A01G288200.1	Wheat	mitochondrion	69.37	68.86
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	69.37	68.86
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	69.37	68.86
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	69.37	68.86
KXG30298	Sorghum	mitochondrion	69.0	68.75
Os04t0398500-01	Rice	mitochondrion	70.48	68.7
VIT_14s0068g01030.t01	Wine grape	mitochondrion	69.0	68.25
GSMUA_AchrUn_...	Banana	mitochondrion	68.63	67.64
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	67.9	66.91
GSMUA_Achr5P21560_001	Banana	mitochondrion	67.9	66.67
TraesCS7B01G151800.1	Wheat	mitochondrion	63.84	63.6
CDX91123	Canola	cytosol	89.67	55.48

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	GO:A0A078FCM2	UniProt:A0A078FCM2	EnsemblPlants:CDY09798
ProteinID:CDY09798	ProteinID:CDY09798.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006091	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0051537	GO:GO:0055114
GO:GO:0070469	GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00031512001	InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355
PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17	MetaCyc:PWY-3781
MetaCyc:PWY-6692	MetaCyc:PWY-7082	MetaCyc:PWY-7279	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot
InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416	UniParc:UPI0001BA4612
InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	SEG:seg	:	:	:	:

Description

BnaC09g43630DCytochrome b-c1 complex subunit Rieske, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078FCM2]

Coordinates

chrLK031999:-:163871..165496

Molecular Weight (calculated)

29666.5 Da

IEP (calculated)

8.697

GRAVY (calculated)

-0.124

Length

271 amino acids

Sequence
(BLAST)

001: MLRIAGRRLL SVQQRSCTAT TFVLSRDHTI DSSPAAPRSA PSADLSSFNS YHRSLIRGLA SQVLTQGNEV GFASEVPATV EAVKTPNSKI VYDDHNHERY
101: PPGDPSKRAF AYFVLSGGRF VYASVLRLLV LKLIVSMSAS KDVLALASLE VDLGSIEPGT TVTVKWRGKP VFIRRRTEDD IKLANSVDLG SLRDPQEDAV
201: RVKNPEWLVV VGVCTHLGCI PLPNAGDYGG WFCPCHGSHY DISGRIRKGP APYNLEVPTY SFLEENKLLI G

Best Arabidopsis Sequence Match ( AT5G13440.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVLSRDHTL SDGGNSSSAS RSVPSADLSS FNSYHRSVIR GFASQVITQG NEIGFGSEVP ATVEAVKTPN SKIVYDDHNH
101: ERYPPGDPSK RAFAYFVLSG GRFVYASVLR LLVLKLIVSM SASKDVLALA SLEVDLGSIE PGTTVTVKWR GKPVFIRRRT EDDIKLANSV DVGSLRDPQE
201: DSVRVKNPEW LIVVGVCTHL GCIPLPNAGD YGGWFCPCHG SHYDISGRIR KGPAPYNLEV PTYSFLEENK LLIG

Arabidopsis Description

UCR1-2Cytochrome b-c1 complex subunit Rieske-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.