Factsheet for GSMUA_Achr5P21560_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09795	Canola	cytosol	43.84	89.63
GSMUA_AchrUn_...	Banana	mitochondrion	82.61	82.91
GSMUA_Achr3P19600_001	Banana	cytosol	66.3	81.33
Solyc11g039840.1.1	Tomato	plastid	73.91	76.98
PGSC0003DMT400041105	Potato	mitochondrion	73.91	76.98
KXG30298	Sorghum	mitochondrion	75.36	76.47
Zm00001d016619_P001	Maize	mitochondrion	74.64	75.74
Zm00001d025286_P001	Maize	mitochondrion	74.64	75.46
EES10690	Sorghum	mitochondrion	73.55	75.19
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	73.91	74.73
CDX69642	Canola	mitochondrion	65.58	74.49
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	73.55	74.36
TraesCS2A01G288200.1	Wheat	mitochondrion	73.55	74.36
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	73.55	74.36
Os02t0520800-01	Rice	mitochondrion	72.83	73.9
TraesCS6A01G202900.1	Wheat	mitochondrion	70.29	73.48
Os04t0398500-01	Rice	mitochondrion	73.55	73.02
TraesCS6D01G187400.1	Wheat	mitochondrion	71.38	72.96
TraesCS6B01G229200.1	Wheat	mitochondrion	71.38	72.96
KRH08411	Soybean	mitochondrion	69.57	72.73
KRH70066	Soybean	mitochondrion	69.2	71.8
KRH70065	Soybean	nucleus	68.48	71.32
VIT_14s0068g01030.t01	Wine grape	mitochondrion	70.29	70.8
AT5G13430.1	Thale cress	mitochondrion	69.57	70.59
CDX70502	Canola	mitochondrion	69.57	70.33
AT5G13440.1	Thale cress	mitochondrion	69.2	69.71
CDX85651	Canola	mitochondrion	68.84	69.34
CDX78520	Canola	mitochondrion	69.2	69.2
CDX70503	Canola	mitochondrion	68.84	69.09
CDX91122	Canola	mitochondrion	67.75	69.0
TraesCS7B01G151800.1	Wheat	mitochondrion	67.75	68.75
Bra006199.1-P	Field mustard	mitochondrion	68.12	68.61
CDX85650	Canola	mitochondrion	68.12	68.61
Bra023411.1-P	Field mustard	mitochondrion	68.12	68.61
Bra023412.1-P	Field mustard	mitochondrion	67.75	68.25
Bra006198.1-P	Field mustard	mitochondrion	68.48	68.23
CDX78521	Canola	mitochondrion	66.67	68.15
CDY09798	Canola	mitochondrion	66.67	67.9
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	67.39	67.64
CDY16491	Canola	mitochondrion	65.94	66.91
Bra008830.1-P	Field mustard	mitochondrion	65.94	66.91
CDX91123	Canola	cytosol	69.2	43.61

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900
GO:GO:0051537	GO:GO:0055114	GO:GO:0070469	GO:GO:1902600	EnsemblPlantsGene:GSMUA_Achr5G21560_001	EnsemblPlants:GSMUA_Achr5P21560_001
EnsemblPlants:GSMUA_Achr5T21560_001	InterPro:IPR017941	InterPro:IPR036922	UniProt:M0T0I1	PFAM:PF00355	PFAM:PF02921
PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416
TMHMM:TMhelix	UniParc:UPI0002950F3D	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	:	:	:

Description

Cytochrome b-c1 complex subunit Rieske, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr5G21560_001]

Coordinates

chr5:+:23654258..23659974

Molecular Weight (calculated)

30151.2 Da

IEP (calculated)

8.958

GRAVY (calculated)

-0.080

Length

276 amino acids

Sequence
(BLAST)

001: MLRVAGRRLA VCSWRPAPTA SVLSSRDPVR GIGDSSAAED PTTVLDRSSR SVFQSPLLGA VRGYVSEIIV PRHQDLGLAD LPATVAAVKN PSSRITYDEH
101: NHERYPPGDP SKRAFAYFVL TGGRFVYASL LRLLILKFVL SMSASKDVLA LASLEVDLSN IEPGSTVTVK WRGKPVFVRR RTADDIKLAN SVDVSSLRDP
201: QVDSDRVKNP EWLVVVGVCT HLGCIPLPNA GDFGGWFCPC HGSHYDVSGR IRKGPAPFNL EVPQYSFLEE NKLLIG

Best Arabidopsis Sequence Match ( AT5G13440.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVLSRDHTL SDGGNSSSAS RSVPSADLSS FNSYHRSVIR GFASQVITQG NEIGFGSEVP ATVEAVKTPN SKIVYDDHNH
101: ERYPPGDPSK RAFAYFVLSG GRFVYASVLR LLVLKLIVSM SASKDVLALA SLEVDLGSIE PGTTVTVKWR GKPVFIRRRT EDDIKLANSV DVGSLRDPQE
201: DSVRVKNPEW LIVVGVCTHL GCIPLPNAGD YGGWFCPCHG SHYDISGRIR KGPAPYNLEV PTYSFLEENK LLIG

Arabidopsis Description

UCR1-2Cytochrome b-c1 complex subunit Rieske-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.